- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1663.g15373.01.t
Possible name(s)
H2AFV; H2AFZ; MAEL
Gene model
Location
S1663 [5,453 / 10,168]
Amino acid sequence
Length: 730
>Phmamm.CG.MTP2014.S1663.g15373.01.p
MYAVGGQDLMLNKPKKSKKKAPRNAFSFYLDEAMKEFKRQGKPVSNKSEAVPLVHETWKN
MSPKEKAPYEAKAKEWKMTNRNQPRPGRLDCTGKRIDDRVDFDDFLDKKRKENRKSARSM
WPKGFGVCNVHFYIISFKSLFELPDEEGYQPCEVACIDYTLSGGILRTWHHFIDPGPIKM
GMRGEVSIFREKTHRIPEANFELACGQYDKMWRELLQFISEDGNLLNFPPLYTRTCELRK
TLYCLDWMAARAGIANRLHKVFELEDIAVELFDHAGVTRPSRTTIEDGCSSSMFDYESDT
KCNYHDDIECIHCALLVAKKCCYWMSDCLSSVYGFEVTDNHLPVRQAPSYIVTPPERIII
DERPRRSGPRVNPLSKESGYDAGLSLPASFTPDGGSQFGSRDIRYRAQYEIVPHGPATAS
ESEHDNGEGGTSFIENASATSTVTNGIIDSTQQFSDNDLPPPVSMPSCKPSEMSRRPKNK
PFANAKVGVMAAQFPKSLKLSDEIPTGPQHPSCKPYTTPQYSGFQNTYAAAAAGTGSCKS
ASPKDNTTLSGSEANLAQARSIIGLGRGRGKFIRREERSFRSGDASVYVSRDSSSNVQDK
DKMAGGKAGKDSGKAKAKAISRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAI
LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSL
IGKKGQQKAP
Nucleotide sequence
Length: 2,193
>Phmamm.CG.MTP2014.S1663.g15373.01.t
ATGTATGCTGTTGGTGGTCAAGATTTAATGCTAAACAAGCCTAAAAAAAGCAAAAAGAAA
GCACCAAGAAATGCCTTTAGTTTTTATCTTGATGAAGCAATGAAAGAGTTTAAAAGACAA
GGAAAGCCTGTTTCGAACAAAAGCGAAGCAGTTCCATTAGTTCATGAAACATGGAAGAAC
ATGTCACCAAAGGAAAAGGCCCCATATGAAGCAAAAGCCAAAGAGTGGAAGATGACAAAT
CGCAATCAGCCTAGACCTGGTCGACTTGATTGCACTGGGAAAAGAATTGATGATAGAGTT
GACTTTGATGATTTCTTGGACAAAAAGAGAAAAGAAAACAGAAAATCAGCAAGGAGTATG
TGGCCGAAAGGATTCGGCGTATGCAACGTACACTTCTACATTATTTCCTTCAAATCTTTG
TTTGAGCTTCCTGATGAAGAAGGATACCAACCTTGCGAAGTTGCATGCATTGATTACACA
CTAAGTGGAGGAATTTTGCGAACATGGCATCATTTTATTGATCCAGGACCTATTAAAATG
GGCATGCGGGGAGAGGTTAGCATCTTCCGGGAGAAAACTCACCGCATTCCTGAAGCAAAT
TTCGAACTGGCATGTGGGCAATACGACAAGATGTGGAGAGAGTTACTGCAGTTTATCAGT
GAAGATGGAAATTTACTTAACTTTCCACCATTGTACACAAGAACTTGTGAGCTTCGAAAA
ACATTGTACTGTCTGGACTGGATGGCTGCTCGAGCTGGCATTGCCAATCGCCTACACAAG
GTTTTTGAGTTGGAAGACATTGCTGTTGAATTGTTTGACCACGCTGGTGTTACTCGGCCT
TCCCGCACTACAATCGAGGATGGCTGCAGCAGTTCGATGTTTGACTACGAGTCCGACACA
AAATGTAATTATCACGATGATATTGAATGCATCCACTGTGCCCTACTTGTAGCGAAAAAG
TGCTGTTATTGGATGAGCGATTGCCTTTCGTCGGTGTACGGATTTGAAGTGACGGACAAC
CATCTACCGGTTCGACAAGCACCCTCCTACATCGTCACACCACCGGAACGAATAATCATT
GACGAAAGGCCACGCCGTTCAGGCCCAAGAGTAAATCCACTGTCAAAGGAAAGTGGTTAC
GACGCTGGCTTAAGTTTGCCGGCATCATTTACACCAGACGGTGGTTCTCAGTTCGGCTCA
AGAGATATACGATACCGTGCCCAATACGAGATTGTACCACATGGACCAGCCACTGCGTCA
GAAAGTGAACATGATAATGGCGAAGGCGGTACCTCCTTCATTGAAAATGCGTCTGCTACA
TCAACTGTAACAAATGGAATAATAGACTCAACGCAGCAGTTCAGTGATAACGACTTGCCG
CCTCCGGTGTCCATGCCAAGTTGCAAGCCATCCGAAATGAGTCGCCGTCCAAAAAATAAG
CCATTTGCAAATGCCAAAGTTGGTGTTATGGCGGCACAGTTTCCAAAGAGCTTGAAATTG
TCAGACGAAATTCCAACTGGTCCCCAGCACCCGTCATGCAAACCATACACTACACCTCAA
TACAGTGGCTTTCAAAATACGTACGCTGCAGCGGCTGCTGGTACCGGATCATGCAAAAGC
GCCAGCCCAAAAGATAATACTACCCTTTCCGGCAGCGAAGCAAATCTGGCGCAAGCGCGA
TCTATCATTGGTTTGGGGCGAGGTCGCGGGAAGTTTATCAGGCGAGAGGAGCGTTCGTTC
CGGTCAGGTGACGCGTCAGTCTACGTCAGTCGAGATAGCAGCAGCAACGTACAGGACAAA
GACAAAATGGCAGGAGGCAAAGCAGGTAAAGATTCCGGCAAAGCAAAGGCAAAAGCCATC
TCGAGGTCGGCGAGAGCAGGACTTCAGTTCCCAGTGGGACGTATCCACAGGCATTTGAAA
TCAAGGACAACTTCTCATGGAAGAGTAGGGGCCACTGCTGCAGTATATAGTGCTGCGATT
TTGGAGTACCTCACTGCTGAGGTGTTGGAGTTGGCTGGAAATGCTAGCAAAGATTTGAAA
GTAAAGAGGATCACACCACGTCACTTGCAGTTGGCCATCAGGGGAGATGAAGAATTGGAT
TCACTTATTAAGGCTACCATTGCTGGTGGAGGTGTGATTCCCCACATACACAAGTCACTC
ATTGGCAAGAAGGGACAACAGAAAGCACCTTGA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[13-78] 1.03E-10 |
| Pfam |
HMG_box_dom (IPR009071) - T[18-81] 2.8E-16 |
| SMART |
HMG_box_dom (IPR009071) - T[18-111] 3.2E-6 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[19-88] 10.663 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[21-79] 1.3E-12 |
| Pfam |
Maelstrom (IPR024970) - T[146-346] 4.8E-33 |
| SUPERFAMILY |
Histone-fold (IPR009072) - T[600-704] 1.3E-41 |
| Pfam |
Histone_H2A/H2B/H3 (IPR007125) - T[604-696] 3.8E-18 |
| Gene3D |
Histone-fold (IPR009072) - T[606-730] 2.0E-53 |
| SMART |
Histone_H2A (IPR002119) - T[607-727] 6.0E-73 |
| CDD |
Histone_H2A (IPR002119) - T[610-724] 7.73847E-66 |
| PRINTS |
Histone_H2A (IPR002119) - T[618-640] 1.1E-40 - T[648-663] 1.1E-40 - T[663-676] 1.1E-40 - T[677-691] 1.1E-40 - T[704-722] 1.1E-40 |
| ProSitePatterns |
Histone_H2A_CS (IPR032458) - T[626-632] . |
| Pfam |
Histone_H2A_C (IPR032454) - T[697-729] 4.9E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| H2AV_HUMAN | 97.619 % | 241 | 2.45E-76 |
| H2AZ_HUMAN | 97.619 % | 241 | 2.81E-76 |
| MAEL_HUMAN | 28.902 % | 175 | 4.47E-48 |