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  1. Transcript 'KH2012:KH.C9.38.v3.A...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1692.g15450.01.t

Possible name(s)

NLRC3; NLRC5; NLRP13

Gene model

Phmamm.CG.MTP2014.S1692.g15450

Location

S1692 [2,871 / 12,622]

Sequences

Amino acid sequence

Length: 1,135

>Phmamm.CG.MTP2014.S1692.g15450.01.p
MDVTQYNKLNGEGFSSLQEAILSEILESKNVFIAFDGLDEASTKWDIEYKGGLNLREKNN
PLLYIFGLLNGDILPNAKKLVTSRQNHFFSINANCRPQFVAEILGLNTKSQESLCKQICP
DHKDEVWKIIESNPNLSYSCYVPAKCVFITFAVWKSLKEDSSERFHSLTHIFAQGFKYYF
ADGFIKGKVKHEKYMDKIAKLAWNGFMKNQTVFKKVDLDNVGIDIKTFTDILSAFVTEEN
WGMKILDCDRKSNFSHLIWQEYFAACYLVYFSSVDEFCELIPQFKSGRWEVVTKFVFGLF
NSKVHEVAETCFLTPNKNKEEFLAKKAKVLELACDEMKVRETKGTVGLGSKKLIQVCSWL
QEIDDKEIYQKVVPFLPQLIQLSGHILLTDVSSITEVLSHSKTKHDVILWGSIDLRENGG
INWKFRSIXQICPDHKDQVWKIIESNPNLSYSCYVPAKCVFITFAVWKSLKEDSSERFHS
LTHIFAQGFKYYFADGFIKGKVKHEKYMDKIAKLAWNGFMKNQTVFKKADLDNVGIDIKT
FTDILSAFVTEENWGMRILDCDRKSNFSHLIWQEYFAACYLVYFLSVDEFCELIPQFKSG
RWEVVTKFVFGLFNSKVHEVAETCFLTPNKNKEEFLAKKSKLLELSCDEMKVRETKGTVG
LGSKKLIQVCSWLQEIDDKEIYQKVVPFLPQLIHLSGNILLTDVSSITEVLSHSETKHDV
ILWESKFIHCRLKDFLEKLMERNIQIKSLAPGKCVRVYQSSMGLTRESASAIASYIPYIE
ELCLLNCRLRSDRINIIAEAISKLSQPIKFLNLGENKVTDESASAIASCIHNIEKLGLTN
CQLTSVEICKIAEAISNLSQPIKFLNFGWNKVTNESASAIASCIHNIEKLDLGDCELTSV
GICKIAEAISNLSQPIKTLNISRNSIDEKAENCLLGCLHNIQDELWVSKSLTSADFESKY
PRLPEPIKLLDLGGNKVTDESASAIAFCIHNIEELYLGACQLTSIGICKLAEAISNLTQP
IKLLDLGETKVNDESASAMASCIHNIERLYLRHCELTSVGICKIAEAIFNLSKPEHKDAS
FTQLVENESIDCCHFMFPFVSIHSAPLSAVKLLAPWPWTVGVDVQTITGSFVISA

Nucleotide sequence

Length: 3,408

>Phmamm.CG.MTP2014.S1692.g15450.01.t
ATGGATGTTACCCAATACAACAAGTTAAATGGTGAAGGATTCTCTTCTTTACAAGAAGCA
ATACTTAGTGAGATTTTAGAATCAAAAAATGTGTTCATTGCCTTTGATGGCCTTGATGAA
GCTTCAACAAAATGGGATATAGAGTATAAAGGTGGTTTAAACTTGCGTGAAAAAAACAAC
CCTTTGCTCTACATATTTGGTCTTTTGAATGGAGACATACTACCTAATGCAAAAAAGCTT
GTTACATCTCGACAAAACCATTTTTTCTCTATTAATGCAAATTGTCGACCCCAATTTGTG
GCTGAAATTTTGGGTTTAAACACAAAATCTCAAGAGAGTTTGTGTAAACAGATTTGCCCT
GACCATAAAGATGAAGTGTGGAAAATCATCGAAAGCAACCCAAACTTATCTTACTCATGT
TATGTGCCAGCTAAATGTGTGTTTATTACATTTGCTGTTTGGAAAAGCCTTAAGGAGGAT
TCGAGTGAAAGATTTCACTCCCTAACTCATATTTTTGCCCAAGGATTTAAGTATTATTTT
GCTGATGGATTTATAAAGGGAAAAGTAAAACATGAAAAATACATGGATAAAATTGCCAAG
TTGGCATGGAATGGATTTATGAAGAACCAAACTGTTTTTAAAAAAGTAGATCTGGACAAT
GTGGGGATTGACATTAAAACATTTACTGACATACTTTCAGCTTTCGTAACTGAAGAAAAT
TGGGGAATGAAAATTCTTGACTGTGACAGAAAGAGCAACTTTTCACATTTAATTTGGCAA
GAGTATTTTGCTGCTTGTTACCTCGTTTACTTCTCAAGTGTTGATGAGTTTTGTGAATTG
ATTCCTCAGTTTAAAAGTGGCAGATGGGAGGTGGTTACCAAGTTTGTGTTTGGTCTTTTC
AACTCAAAAGTACACGAAGTTGCTGAAACTTGTTTTTTGACACCAAACAAAAACAAAGAA
GAATTCCTGGCCAAAAAGGCAAAAGTATTGGAACTTGCCTGTGATGAGATGAAAGTGAGG
GAAACAAAAGGAACTGTAGGTCTAGGGTCAAAGAAGCTAATACAAGTCTGCTCATGGTTG
CAAGAAATTGACGACAAAGAAATTTATCAGAAAGTTGTCCCATTTTTACCACAGCTCATA
CAATTAAGTGGCCACATACTTTTGACGGATGTCTCAAGCATTACAGAAGTGTTGAGTCAT
TCCAAAACAAAGCATGACGTCATATTATGGGGAAGTATTGATTTGCGAGAGAATGGAGGG
ATTAATTGGAAGTTCAGAAGTATTTNACAGATTTGCCCTGACCATAAAGATCAAGTGTGG
AAAATCATCGAAAGCAACCCAAACTTATCTTACTCATGTTATGTGCCAGCTAAATGTGTG
TTTATTACATTTGCTGTTTGGAAAAGCCTTAAGGAGGATTCGAGTGAAAGATTTCACTCC
CTAACTCATATTTTTGCACAAGGATTTAAGTATTATTTTGCTGATGGATTTATAAAGGGA
AAAGTAAAACATGAAAAATACATGGATAAAATTGCCAAGTTGGCATGGAATGGATTTATG
AAGAACCAAACTGTTTTTAAAAAAGCAGATCTGGACAATGTGGGGATTGACATTAAAACA
TTTACTGACATACTTTCAGCTTTTGTAACAGAAGAAAATTGGGGAATGAGAATTCTTGAC
TGTGACAGAAAGAGCAACTTTTCACATTTAATTTGGCAAGAGTATTTTGCTGCTTGTTAC
CTCGTTTACTTTTTAAGTGTTGATGAGTTTTGTGAATTGATTCCTCAGTTTAAAAGTGGC
AGATGGGAGGTAGTTACCAAGTTTGTGTTTGGTCTTTTCAACTCAAAAGTACACGAAGTG
GCTGAAACTTGTTTTTTGACACCAAATAAAAACAAAGAAGAATTCCTGGCCAAAAAGTCC
AAGTTATTGGAACTTTCCTGTGATGAGATGAAAGTGAGGGAAACAAAAGGAACTGTAGGC
TTAGGGTCAAAGAAGCTAATACAAGTCTGCTCATGGTTGCAAGAAATTGATGATAAAGAA
ATTTATCAGAAAGTTGTCCCATTTTTACCACAGCTCATACATTTAAGTGGCAACATACTT
TTGACGGATGTCTCAAGCATTACAGAAGTGTTGAGTCATTCCGAAACCAAGCATGACGTC
ATATTATGGGAAAGTAAATTTATTCATTGCCGTTTGAAAGATTTTTTAGAAAAGCTGATG
GAGCGCAACATACAGATTAAATCTTTAGCCCCTGGAAAATGTGTAAGGGTATACCAATCC
TCCATGGGCCTAACTCGTGAAAGTGCATCTGCAATAGCTTCCTACATTCCTTATATTGAG
GAACTATGTCTGTTAAATTGTAGACTACGAAGTGATCGAATTAATATAATTGCAGAAGCC
ATTTCCAAGCTTTCACAACCAATCAAATTTTTGAACCTTGGTGAAAACAAAGTCACTGAT
GAAAGTGCATCTGCTATAGCTTCTTGTATTCATAATATTGAGAAACTGGGGCTGACAAAT
TGTCAACTGACAAGTGTTGAAATTTGTAAAATCGCAGAAGCTATTTCCAACCTTTCACAA
CCAATTAAATTTTTGAACTTTGGTTGGAACAAAGTCACTAATGAAAGTGCATCTGCTATA
GCTTCCTGTATTCATAATATTGAGAAATTGGATCTGGGGGATTGTGAACTGACAAGTGTT
GGAATTTGTAAAATTGCAGAAGCTATTTCCAACCTTTCACAACCAATAAAAACACTTAAC
ATCAGTAGAAACTCAATTGATGAGAAAGCAGAAAATTGTTTACTGGGTTGTTTGCACAAC
ATACAAGATGAACTTTGGGTGTCAAAATCACTCACAAGTGCGGACTTTGAATCAAAATAC
CCAAGATTACCTGAACCTATTAAATTATTGGACCTTGGTGGGAACAAAGTCACTGATGAA
AGTGCATCTGCAATAGCTTTCTGTATTCATAACATTGAGGAACTGTATCTCGGGGCTTGT
CAACTGACAAGCATTGGAATTTGTAAACTAGCTGAAGCCATTTCCAACCTTACACAACCA
ATTAAATTGTTGGACCTTGGTGAGACCAAAGTCAATGATGAAAGTGCATCTGCAATGGCT
TCCTGTATCCATAATATTGAGCGTCTTTATCTGAGGCATTGTGAACTGACAAGTGTTGGA
ATTTGTAAAATTGCAGAAGCTATTTTCAACCTTTCAAAACCAGAGCATAAGGATGCCAGC
TTCACTCAACTTGTTGAAAACGAAAGCATCGATTGCTGCCACTTTATGTTTCCTTTTGTC
TCTATACATTCTGCTCCTTTAAGTGCAGTGAAACTGTTGGCTCCTTGGCCATGGACAGTT
GGAGTTGATGTCCAAACTATTACTGGATCATTTGTGATTTCTGCCTGA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[729-950] 6.7E-30 - T[951-1094] 1.6E-19
Pfam
Leu-rich_rpt (IPR001611) - T[808-827] 0.45 - T[862-881] 1.3 - T[970-986] 0.14
SMART
Leu-rich_rpt_Cys-con_subtyp (IPR006553) - T[884-908] 33.0 - T[989-1013] 140.0 - T[1043-1067] 34.0

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value





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