Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1731.g15535.01.t

Possible name(s)

EXOSC1; EXOSC2

Gene model

Phmamm.CG.MTP2014.S1731.g15535

Location

S1731 [18,313 / 20,098]

Sequences

Amino acid sequence

Length: 199

>Phmamm.CG.MTP2014.S1731.g15535.01.p
SMEHILGQKCIPGERLTSVESCRSGTGTYQRQGYIFASLTGVVCKEEKETDLPILYVASR
HKAQSVPEVGNIVTCKITQISSRFAKCQITAVNNCSLAHAFRGMIRKEDVRSTERDKVEI
FKSFHPGDIVLAKVLSLGDAQWYLLTTAENELGVVVAQSENGTPLTALSHNEMQCPVTHV
KESRKVARPQKEHIGFPER

Nucleotide sequence

Length: 1,107

>Phmamm.CG.MTP2014.S1731.g15535.01.t
TTTCAATGGAGCATATTCTAGGACAAAAATGCATACCTGGTGAAAGATTAACTAGTGTTG
AGTCATGTCGAAGTGGGACTGGTACTTATCAACGTCAAGGTTATATTTTTGCCTCTCTCA
CTGGAGTTGTATGTAAGGAAGAAAAGGAAACAGACCTGCCAATATTGTATGTTGCATCAA
GACACAAAGCACAGAGTGTGCCCGAAGTTGGAAATATTGTGACTTGCAAGATTACACAAA
TTTCCTCCAGATTTGCCAAATGTCAAATAACTGCAGTGAACAACTGTAGTTTGGCTCATG
CATTTCGTGGAATGATTCGCAAAGAGGATGTAAGATCAACCGAACGTGATAAAGTGGAAA
TTTTTAAATCATTTCACCCTGGAGACATTGTCCTTGCCAAAGTACTGTCTTTGGGTGATG
CTCAATGGTACCTTTTGACGACTGCTGAAAATGAACTGGGAGTGGTTGTTGCACAAAGTG
AGAATGGAACGCCACTCACTGCCCTCAGTCACAATGAGATGCAATGCCCAGTAACGCATG
TAAAGGAAAGTCGAAAAGTTGCTAGACCACAGAAAGAACACATCGGTTTTCCAGAAAGAT
AAACACAAAAGCTGTACAGTATTTGTGTTTGTCTATGCGCAACACCACTGGAAAGCACTG
ATGTAGTTATTTGCCAGGGCACAACAAACCAACGAATGCAAGTTTGGAATAAAAGCAAAA
TCCTGAGAATGATAGCTTACCATGTAGCATGTACCAACAAAAACAAAACAATTCCACTGT
ATGATATGGCTTGTAGTATGAAAATGATTTCAAGTCAACCCAGTAATAACGTTACTGAGC
ATATTGTACAACTTACAAATCAAATGTCGTCGAGTTGGTCAATTTCGTTTGCTGGAATAA
GAAAATCGGATTGACCAGTGAAAAAATCGGGCCTGCTCTTTTCAATAAATGCAGTGAAAG
CTGATCGGGTGTCTTTCAACTTTTTCACATAGGAGTTCTTTAGGCCCTCCATTGCATTGT
ACGCAAGTTCCGTCTTTCGTTGCTTGTTTTCCAGATCTGCTATGTTTTGTCGTAGGTCGG
CAATGTGGTTCCTAAACTCTTCTGAAA

InterProScan

Pfam	Exosome_cplx_N_dom (IPR025721) - T[10-43] 5.2E-10
SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[65-186] 4.22E-34
Pfam	EXOSC1 (IPR019495) - T[97-137] 2.5E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EXOS1_HUMAN	60.215 %	221	3.81E-74