Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1731.g15535.02.t

Possible name(s)

EXOSC1; EXOSC2

Gene model

Phmamm.CG.MTP2014.S1731.g15535

Location

S1731 [18,818 / 20,093]

Sequences

Amino acid sequence

Length: 198

>Phmamm.CG.MTP2014.S1731.g15535.02.p
MEHILGQKCIPGERLTSVESCRSGTGTYQRQGYIFASLTGVVCKEEKETDLPILYVASRH
KAQSVPEVGNIVTCKITQISSRFAKCQITAVNNCSLAHAFRGMIRKEDVRSTERDKVEIF
KSFHPGDIVLAKVLSLGDAQWYLLTTAENELGVVVAQSENGTPLTALSHNEMQCPVTHVK
ESRKVARPQKEHIGFPER

Nucleotide sequence

Length: 597

>Phmamm.CG.MTP2014.S1731.g15535.02.t
ATGGAGCATATTCTAGGACAAAAATGCATACCTGGTGAAAGATTAACTAGTGTTGAGTCA
TGTCGAAGTGGGACTGGTACTTATCAACGTCAAGGTTATATTTTTGCCTCTCTCACTGGA
GTTGTATGTAAGGAAGAAAAGGAAACAGACCTGCCAATATTGTATGTTGCATCAAGACAC
AAAGCACAGAGTGTGCCCGAAGTTGGAAATATTGTGACTTGCAAGATTACACAAATTTCC
TCCAGATTTGCCAAATGTCAAATAACTGCAGTGAACAACTGTAGTTTGGCTCATGCATTT
CGTGGAATGATTCGCAAAGAGGATGTAAGATCAACCGAACGTGATAAAGTGGAAATTTTT
AAATCATTTCACCCTGGAGACATTGTCCTTGCCAAAGTACTGTCTTTGGGTGATGCTCAA
TGGTACCTTTTGACGACTGCTGAAAATGAACTGGGAGTGGTTGTTGCACAAAGTGAGAAT
GGAACGCCACTCACTGCCCTCAGTCACAATGAGATGCAATGCCCAGTAACGCATGTAAAG
GAAAGTCGAAAAGTTGCTAGACCACAGAAAGAACACATCGGTTTTCCAGAAAGATAA

InterProScan

Pfam	Exosome_cplx_N_dom (IPR025721) - T[9-42] 5.2E-10
SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[64-185] 4.09E-34
Pfam	EXOSC1 (IPR019495) - T[96-136] 2.5E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EXOS1_HUMAN	60.215 %	221	4.05E-74