Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1772.g15614.01.t

Possible name(s)

NLRC3; NLRP1; NLRP13

Gene model

Phmamm.CG.MTP2014.S1772.g15614

Location

S1772 [7,597 / 15,505]

Sequences

Amino acid sequence

Length: 650

>Phmamm.CG.MTP2014.S1772.g15614.01.p
MGDIVPQHSSTHGSVDVSLTQRPDTSKTQSILSQSFGDVLPQHSLTEESGSMVPQSSSNH
HLPVNVQSRNLVFNLLKKFDLSYTEISIAEATSLACCVENIEELVLRQCDIESGVAKLCD
GIKKPLKKLDLTCNKIGNTEVGILARFIGKFEELILRECEIGSKGVEKICNEMKKLTQPM
KLFNLSYNWLKDDSVLSLALCVHNIDVFVAFDNRFSPVGERFIAQWSRGNVYFNNLSNDF
AHGEVAEDRWEDESQSVDEISNTSVSNELEPAMPESPCLDSQQKATFLLKSIKLDLNFSK
AEIMQIFNWAHESNDPEIVLLVASSLPDKLDFSKSNGDLSLLPVNIEDLSFVIKHRVVPL
KRLDLSNNKIGNMGASFLAPSLFNIQELILEGCDIESKGVEKLRFGTENLTKPINLLSLG
YNPTRDDGAKHAAKCLENIELLDLTKCGITSDGGRHLLTAIRLRPYQENYDFIKTTTLVV
GSEGATLKTNGCAVEIPQNALSQPTTIKITSYYGKRRATDKNNELIQFSSRLKCEPNYLR
FKKAVSITLPTCFVSEDRQMIVVKESDDGLKWKDVETILYQNQMQLQFYTTHFTWQDSGL
SAMLTNVNVFAWQVKESDDGLEWKDIVTIFYDNQMQLQFNTTHFTWQDSV

Nucleotide sequence

Length: 1,953

>Phmamm.CG.MTP2014.S1772.g15614.01.t
ATGGGTGACATTGTTCCTCAACACAGTTCGACCCATGGATCAGTTGATGTCAGCTTGACC
CAAAGACCAGATACCTCTAAAACCCAATCGATCCTATCCCAAAGTTTTGGAGACGTACTA
CCCCAACACAGCCTAACTGAAGAATCCGGGTCTATGGTACCTCAATCAAGTTCGAATCAC
CATTTGCCAGTTAATGTGCAGAGCAGAAACTTGGTTTTCAACTTGCTGAAGAAATTTGAC
CTCTCCTACACTGAGATCAGCATCGCAGAAGCAACGTCACTAGCTTGTTGCGTTGAAAAT
ATAGAAGAACTTGTGCTTCGGCAATGCGACATCGAAAGTGGAGTTGCAAAACTCTGTGAT
GGAATAAAGAAGCCGCTTAAGAAACTTGACCTCACCTGTAACAAGATTGGCAACACAGAA
GTAGGGATACTGGCTCGTTTCATTGGAAAATTTGAAGAGCTTATACTGCGAGAATGTGAG
ATCGGAAGTAAAGGCGTCGAGAAAATCTGCAATGAAATGAAAAAATTAACACAACCGATG
AAACTTTTCAACCTGTCATACAACTGGCTGAAAGATGACAGTGTACTATCGTTGGCACTA
TGTGTCCACAACATCGACGTGTTTGTGGCTTTTGATAATCGTTTTTCGCCAGTAGGAGAA
AGATTTATCGCACAGTGGTCGCGAGGAAATGTTTACTTCAATAATCTGAGCAATGATTTT
GCCCACGGAGAAGTTGCAGAAGACAGATGGGAAGATGAATCCCAATCTGTTGATGAGATT
TCAAATACGTCGGTCTCCAATGAACTCGAGCCTGCAATGCCTGAAAGTCCCTGTCTCGAC
TCGCAGCAGAAAGCAACCTTTCTTTTGAAATCTATTAAGTTAGATTTAAACTTCAGCAAA
GCAGAAATTATGCAAATTTTTAACTGGGCCCATGAGTCAAATGATCCAGAAATTGTTTTG
CTTGTGGCCTCCTCACTTCCGGATAAACTCGACTTCAGTAAATCAAATGGTGATTTATCT
CTTCTCCCAGTTAACATCGAAGATCTTTCGTTCGTGATTAAACACAGAGTGGTACCTCTC
AAGAGACTCGATCTCTCTAACAACAAGATCGGCAATATGGGAGCCTCTTTCTTGGCTCCA
TCTCTTTTTAACATTCAAGAGCTTATACTGGAAGGATGTGACATTGAAAGTAAGGGCGTC
GAGAAACTTCGTTTTGGAACGGAAAACTTAACAAAGCCGATAAACCTGCTATCGCTTGGA
TACAATCCAACACGTGATGACGGAGCAAAGCATGCAGCAAAATGTTTGGAAAATATCGAG
CTGCTTGATCTGACTAAGTGTGGAATAACCAGTGATGGTGGTCGACACTTATTGACGGCA
ATCCGACTAAGACCGTACCAGGAAAATTATGACTTTATCAAAACCACAACATTGGTTGTT
GGGTCAGAAGGAGCTACACTTAAAACTAATGGATGTGCTGTTGAAATTCCACAAAACGCT
TTGAGTCAACCAACAACAATCAAAATTACCAGTTACTATGGAAAGCGACGTGCAACAGAC
AAAAATAATGAACTGATTCAGTTCTCATCAAGGCTCAAATGCGAACCAAATTATCTACGA
TTCAAGAAAGCTGTTTCAATCACTTTACCGACCTGTTTCGTATCAGAAGATCGACAAATG
ATTGTGGTGAAGGAAAGTGATGATGGCTTGAAATGGAAGGATGTTGAAACCATTTTATAC
CAGAATCAAATGCAACTTCAATTTTACACCACTCACTTTACATGGCAAGACAGTGGTTTA
AGTGCAATGTTAACAAACGTTAATGTATTTGCATGGCAGGTGAAGGAAAGTGATGATGGT
TTGGAGTGGAAGGATATTGTAACCATCTTCTATGACAATCAAATGCAACTTCAGTTTAAC
ACCACTCACTTTACATGGCAAGATAGTGTTTGA

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[45-255] 3.5E-19 - T[345-472] 3.1E-18
Pfam	Leu-rich_rpt (IPR001611) - T[126-138] 0.37 - T[152-170] 0.64 - T[360-379] 0.034
Pfam	ZU5_dom (IPR000906) - T[477-566] 2.7E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value