Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1864.g15796.01.t

Possible name(s)

CD22; CEACAM5; SIGLEC11

Gene model

Phmamm.CG.MTP2014.S1864.g15796

Location

S1864 [16,456 / 21,478]

Sequences

Amino acid sequence

Length: 529

>Phmamm.CG.MTP2014.S1864.g15796.01.p
MTTQQFDLNQFYSSVDPVESCVVTTFEITVPLNQSFHGIKVELIPSCSGVRSLTLNTCSG
PSSGACIITATIDIQDCTKTLVDDVIVVSSELTYNTPGRFSCPHGGRLFYVNGTETTNNA
TVCLQSAQWRGQDGLQCWRGFITCHVTNCAGSKQSEENQIIVVELRTARIQESSPIIEGQ
ALNLICEIDYQDTLNTTFQWTSISGVITSNNPSLMIDNITRFDAGKYTCMTSDLFQNSSI
KTDVVVLYKPYDVTLNPQLSKDIVYTGSRVLLNGNQDVTLFCDSDANPQANCTFQFAGNT
SEFSGACETTHHINSQQLVACFAANRHGNEIDPTPPGTGDQTIVIAASVVGVLVFVSVVI
ATLVFFYRRNHTMKQPDASEAAPQLEYATVDLTKKNKKKIEKKERINPIYGGLDNPDEIP
DAYSYTQGSSAKTKSDEPLDAYAQVDLKKKNREITNDKEEGINPLYSVSCPSPSLTGETY
ATVDKSKPGITFNYFAIFKMFNYIAFDRNQGTPEEGTEAPNQKETNHSS

Nucleotide sequence

Length: 1,590

>Phmamm.CG.MTP2014.S1864.g15796.01.t
ATGACAACTCAGCAATTCGACCTTAACCAATTTTATTCATCCGTTGACCCGGTTGAAAGT
TGTGTTGTGACAACATTTGAGATAACAGTTCCTTTAAATCAATCTTTTCATGGAATAAAA
GTTGAACTTATTCCTTCCTGTTCTGGAGTAAGAAGCTTGACCCTAAATACATGTAGTGGT
CCATCCAGTGGTGCATGCATTATCACAGCTACAATTGATATTCAAGATTGCACAAAAACA
TTGGTTGATGACGTCATCGTGGTGTCATCAGAACTGACGTACAACACTCCAGGTAGATTT
AGTTGTCCACATGGAGGAAGGCTTTTCTACGTAAACGGAACAGAAACGACAAATAATGCG
ACAGTTTGTCTACAATCAGCTCAATGGCGAGGTCAGGATGGATTGCAGTGCTGGAGAGGG
TTTATCACGTGTCATGTTACAAACTGTGCTGGATCGAAACAAAGTGAAGAAAATCAGATA
ATTGTTGTGGAACTCAGGACTGCCAGAATTCAGGAAAGCTCACCAATTATTGAAGGACAA
GCCTTGAATTTAATTTGTGAGATTGATTATCAAGATACACTCAACACAACCTTTCAATGG
ACCAGTATTTCTGGCGTCATCACATCAAATAATCCTTCTCTAATGATTGACAATATAACA
CGATTTGATGCAGGAAAATATACATGCATGACAAGTGACTTGTTTCAAAATTCCTCAATC
AAAACAGACGTTGTGGTCTTATACAAGCCGTATGATGTAACTCTCAACCCACAATTGTCT
AAAGACATCGTTTACACCGGTTCACGCGTACTACTAAATGGAAATCAAGATGTGACGTTG
TTTTGTGACAGCGATGCTAATCCACAAGCTAACTGCACTTTTCAATTTGCTGGCAACACT
TCAGAATTTTCCGGCGCTTGCGAAACTACACATCACATAAACTCACAACAACTGGTTGCT
TGTTTTGCTGCTAATCGGCATGGGAATGAAATTGATCCAACTCCACCAGGCACTGGTGAC
CAAACAATCGTAATAGCTGCCAGTGTTGTTGGGGTCTTGGTGTTCGTTTCCGTGGTGATT
GCTACATTGGTGTTTTTCTACCGTCGAAATCACACCATGAAACAACCAGATGCTAGCGAA
GCAGCGCCTCAACTTGAATACGCAACAGTTGACTTGACGAAGAAAAACAAAAAGAAAATC
GAAAAAAAAGAACGAATAAACCCGATCTATGGTGGACTGGACAACCCTGATGAAATTCCG
GATGCATACAGTTATACGCAAGGCTCGTCAGCTAAGACCAAAAGTGACGAACCTTTGGAC
GCTTACGCTCAGGTTGATTTGAAAAAGAAAAATCGAGAAATCACTAACGACAAAGAAGAA
GGGATAAATCCTTTGTATTCCGTCTCATGCCCATCTCCATCGTTAACAGGGGAAACTTAT
GCAACAGTTGACAAATCAAAACCTGGTATTACATTTAATTATTTTGCAATCTTTAAAATG
TTTAACTATATCGCATTCGATAGAAACCAAGGCACTCCCGAAGAAGGCACTGAAGCCCCC
AATCAAAAAGAAACCAATCATTCTTCCTAA

InterProScan

ProSiteProfiles	Ig-like_dom (IPR007110) - T[158-247] 8.974
Gene3D	Ig-like_fold (IPR013783) - T[169-239] 4.0E-11
SMART	Ig_sub (IPR003599) - T[171-247] 2.4E-5
SUPERFAMILY	Ig-like_dom_sf (IPR036179) - T[173-250] 5.21E-10
Pfam	Immunoglobulin (IPR013151) - T[176-241] 7.6E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value