- Transcript 'KH2012:KH.C8.611.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S186.g04982.01.t
Possible name(s)
SALL3
Gene model
Location
S186 [57,780 / 78,356]
Amino acid sequence
Length: 1,223
>Phmamm.CG.MTP2014.S186.g04982.01.p
DLNMNPAIWNTANTEPDVDAKEIDEDGRFESDSENTNKNGAAAKNYDCGSSDNLSRQMNV
SELESRSTVQVTENMVQSVENGSVSSDPLCHSDENRYEGSARHLAHHNTTEREFDNRRPI
MSLKDDVTDQEPHPDNMPGERGDSGDHSPGEPQGFNQLSEYEESIRRFTEKQMMAQQQQE
RENDETDTTDKLEDTKEIEDIKDQVRRLQQQQMCQIQMLNYLHFQLAMVASTNQQPHQRP
SPCFFPGSQQQFPGLNGMQIQNMLANAVANGPGGQPTTPLNGVLPNMANVLERQFANGEL
TTKKEASDPNECDERLSESSSSLEPKRASFSFGGEIKERALDNKNTPASGNGNSDDKQQA
GFAKHACRYCQKIFGSDSALQIHLRSHTGERPYKCNICANRFSTRGNLKVHFIRHKSKYP
NVEMNPHPVPEYLDNIPTDNGIPIGMSMVPDESDLPGYGSNDGNDRDSPSDSLFEQRDGD
IGKYPVPSNQSDLDLVQSLKNPETENDSSSEQSTSLASVNESGFKHGNSTLSFPLFSAQE
PHQEGDENCKVTEKMVEAQTAMESCKIESMEKKYAEKISASFSSPAQAQNRIPSSETKKL
ENLVNRIDHGKELEKNECHICRRVLSCQSALKLHYRTHTGERPYKCDLCSRAFTTRGNLR
THYSSVHRQQLRPSPPQSSASSRSSVLQCPLCGSRFMDQQSLQQHMHMHLYINSQQQQQQ
HQQQIARFIAGQQPGVASLPGYPPVSLPSTNSEKERESLATIDNGAPGNRMSSDQPEDDT
SANDEVFEDQSPAQSFGTRATPDESSNGAVDSSPQPHRDALRKDSRDFHINGRMQPSALD
LTRANSKSPSDLAMQGSDTEQTDVRDMGPIKTVSNPLSELAHLASSSAIMRPGGMSIMSL
QASPPSDEARHRKMTTSCEICSKPFTCQSALEIHLRSHTKERPFVCRVCERGFTTKGNLK
QHLLTHNITEVDDDMLEPVTSPIAGNSSIESPVSSPSMTNGSQTSGLKRPLESNQAPPSA
KRTYPRHWCHICQKQFSSASSLQIHNRTHTGEKPFACSVCGRAFTTKGNLKVHMGTHVWG
AGGSRRGRRISMDNPLISPWMQNTSNTAANPGLRPRAPQTIAAVPDPAAIYQQYAALASA
GLMGVKATTDPRFHGNGILNLNNSAAARLLLSQGNGHVTPPGAVPSVGQTLNAIEAMKAN
ENKNISAAEWFWKAYQRTQEQVN
Nucleotide sequence
Length: 3,676
>Phmamm.CG.MTP2014.S186.g04982.01.t
GACTTGAACATGAACCCGGCGATTTGGAACACCGCCAACACAGAACCTGATGTTGATGCT
AAAGAAATAGACGAGGACGGCAGATTTGAATCGGACTCGGAGAACACAAATAAAAATGGC
GCAGCGGCAAAGAATTACGATTGCGGCAGTTCGGATAACTTGAGTAGACAAATGAATGTT
AGCGAGCTGGAATCAAGATCAACAGTTCAAGTGACGGAAAACATGGTACAAAGTGTGGAA
AATGGGAGCGTCAGTAGCGACCCTCTCTGCCATTCCGACGAAAATCGATATGAAGGATCT
GCAAGACACCTCGCGCACCATAACACCACTGAGCGAGAATTCGACAATCGGCGACCCATT
ATGTCATTGAAAGATGACGTAACCGATCAAGAACCTCATCCTGATAACATGCCTGGCGAA
AGAGGTGATAGCGGCGATCATAGTCCAGGAGAACCACAAGGGTTTAACCAACTTAGCGAA
TATGAAGAGAGTATTAGGAGGTTTACAGAGAAACAAATGATGGCACAGCAACAACAGGAA
CGCGAAAATGACGAAACCGATACCACCGACAAACTAGAAGACACCAAAGAAATCGAGGAC
ATCAAGGACCAAGTTCGGCGCCTGCAACAACAACAGATGTGCCAGATTCAAATGCTAAAC
TATCTGCATTTTCAGCTTGCCATGGTGGCATCGACAAACCAACAACCACATCAGCGACCA
TCGCCATGTTTCTTTCCAGGGTCGCAGCAACAGTTCCCTGGTTTAAATGGGATGCAAATT
CAGAACATGTTGGCAAATGCAGTTGCGAATGGGCCTGGTGGACAACCAACTACACCGTTA
AATGGTGTCTTGCCAAATATGGCCAATGTACTGGAGCGACAGTTTGCCAATGGTGAACTA
ACAACGAAAAAAGAGGCGTCGGACCCGAACGAGTGTGATGAAAGACTAAGCGAGAGTTCG
TCTTCGTTGGAACCGAAACGGGCTTCGTTCAGTTTTGGGGGCGAAATCAAGGAACGAGCT
TTGGACAACAAAAATACACCAGCGTCAGGGAATGGAAACAGCGACGACAAGCAGCAAGCA
GGATTTGCAAAGCACGCGTGTCGCTACTGTCAGAAAATTTTCGGAAGCGACAGTGCTCTG
CAAATCCATTTGCGTTCACATACAGGCGAGCGCCCTTACAAGTGCAACATTTGCGCCAAT
CGCTTCTCCACCAGAGGCAATCTGAAAGTCCACTTCATTCGGCACAAGAGCAAGTATCCA
AATGTTGAAATGAATCCTCACCCGGTCCCTGAGTATCTGGACAACATTCCCACCGACAAC
GGTATACCCATTGGCATGTCCATGGTCCCTGATGAATCTGATTTACCCGGTTATGGAAGC
AATGACGGCAATGATCGAGACTCTCCTAGCGATAGCTTGTTCGAACAGCGTGATGGTGAC
ATTGGAAAGTACCCGGTTCCGAGCAATCAAAGTGACTTGGATCTTGTCCAATCTCTGAAA
AACCCGGAAACAGAAAACGACAGTTCGAGTGAACAGAGCACTTCGCTTGCATCAGTCAAC
GAAAGTGGCTTTAAGCACGGTAACTCAACCCTGTCATTCCCATTGTTTTCTGCGCAAGAG
CCCCACCAAGAAGGTGATGAAAATTGTAAAGTTACAGAAAAGATGGTGGAAGCCCAAACC
GCAATGGAAAGCTGCAAAATTGAAAGCATGGAGAAGAAATATGCAGAAAAGATATCTGCT
TCGTTTTCATCCCCTGCTCAAGCTCAAAATCGAATTCCTTCTTCAGAAACAAAGAAACTA
GAGAACTTGGTGAATCGAATTGATCATGGCAAGGAACTCGAAAAGAACGAATGTCATATT
TGCCGACGAGTCTTGAGCTGCCAGAGCGCCCTCAAGTTGCATTACCGGACCCATACAGGT
GAACGACCTTATAAGTGCGATTTATGTTCGCGTGCTTTTACGACGCGCGGCAACTTGAGG
ACCCACTACAGCAGCGTGCACCGGCAACAACTAAGACCATCGCCACCCCAGAGTAGCGCA
TCGTCCCGCAGCAGCGTACTGCAGTGTCCGTTGTGTGGAAGCCGCTTCATGGACCAACAG
TCTCTTCAGCAACACATGCATATGCATTTGTACATAAACAGCCAGCAGCAACAACAGCAG
CATCAGCAACAAATAGCTCGGTTCATCGCCGGTCAACAGCCAGGCGTCGCCAGCTTACCA
GGGTATCCCCCAGTCAGTCTTCCGTCGACTAACTCTGAAAAAGAAAGAGAGAGCCTCGCA
ACTATTGACAACGGAGCACCCGGCAACCGCATGTCGAGCGACCAACCAGAAGACGACACG
TCAGCTAACGACGAGGTGTTCGAAGACCAGTCTCCAGCACAGAGTTTTGGTACAAGAGCA
ACCCCCGATGAGTCTTCCAATGGAGCTGTTGATTCGAGCCCACAGCCACATCGTGATGCG
CTACGAAAAGATAGTCGAGACTTCCATATCAATGGACGAATGCAGCCATCGGCTCTTGAT
TTAACCCGAGCAAATTCTAAATCACCGAGCGACTTGGCAATGCAGGGATCAGACACTGAG
CAAACCGATGTCAGAGATATGGGTCCAATAAAAACTGTTTCTAACCCGCTGAGTGAACTG
GCCCACCTAGCTTCTAGCAGCGCTATCATGCGGCCTGGTGGAATGTCTATAATGAGCCTT
CAGGCGTCGCCGCCAAGCGATGAGGCTCGCCACAGGAAAATGACTACATCGTGTGAAATT
TGCAGCAAACCCTTCACATGTCAAAGCGCACTGGAGATTCACCTTCGAAGTCATACCAAA
GAACGGCCGTTTGTCTGTCGAGTTTGCGAGAGAGGCTTTACCACGAAAGGAAATCTCAAA
CAGCACTTGTTAACCCACAACATAACCGAAGTGGACGATGATATGCTAGAACCAGTGACA
AGCCCTATTGCCGGCAATTCATCGATCGAAAGTCCGGTCAGTTCACCTTCAATGACTAAC
GGTTCACAAACAAGCGGACTTAAGCGCCCTTTGGAATCCAATCAAGCGCCGCCTTCGGCC
AAAAGAACTTATCCCAGGCATTGGTGTCACATTTGTCAAAAACAATTTTCTTCAGCCAGT
TCTCTTCAGATTCACAATCGAACGCACACTGGTGAAAAGCCGTTTGCATGCAGTGTCTGT
GGAAGGGCCTTTACCACAAAAGGAAACTTAAAAGTTCATATGGGGACGCACGTATGGGGC
GCTGGCGGTTCACGACGGGGCCGAAGAATTTCTATGGATAATCCTCTTATTTCCCCATGG
ATGCAAAATACTTCCAATACCGCTGCCAATCCTGGCCTTCGGCCTCGCGCTCCACAGACC
ATTGCTGCTGTACCAGATCCAGCTGCTATCTATCAACAATACGCTGCACTTGCGTCCGCC
GGCCTCATGGGAGTCAAGGCAACCACCGACCCTCGGTTCCATGGCAATGGCATTTTAAAT
TTGAACAATTCTGCTGCTGCAAGACTACTGTTGTCACAAGGCAACGGTCACGTAACCCCA
CCAGGAGCAGTTCCTTCGGTTGGACAAACCCTCAATGCAATTGAAGCCATGAAAGCAAAC
GAGAACAAAAACATTTCAGCTGCTGAATGGTTTTGGAAAGCTTATCAGAGAACACAGGAG
CAGGTAAACTAGAACA
| SMART |
Znf_C2H2_type (IPR013087) - T[365-387] 0.0072 - T[393-415] 0.0051 - T[616-638] 4.1 - T[644-667] 3.4E-4 - T[687-709] 9.9E-4 - T[916-938] 0.091 - T[944-966] 8.5E-4 - T[1027-1049] 0.69 - T[1055-1077] 1.6E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[365-392] 14.524 - T[393-420] 11.448 - T[616-643] 13.131 - T[644-672] 11.635 - T[687-709] 9.951 - T[916-943] 13.671 - T[944-966] 10.492 - T[1027-1054] 14.96 - T[1055-1077] 11.801 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[365-415] 8.11E-14 - T[617-663] 8.03E-13 - T[917-966] 7.43E-14 - T[1027-1077] 2.97E-16 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[367-387] . - T[395-415] . - T[618-638] . - T[646-667] . - T[689-709] . - T[918-938] . - T[946-966] . - T[1029-1049] . - T[1057-1077] . |
| Pfam |
Znf_C2H2_type (IPR013087) - T[644-667] 4.4E-4 - T[944-966] 3.4E-4 - T[1029-1049] 0.0086 - T[1055-1077] 2.4E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SALL1_HUMAN | 44 % | 223 | 4.82E-59 |
| SALL3_HUMAN | 43.333 % | 276 | 2.88E-76 |
| SALL4_HUMAN | 55 % | 124 | 1.48E-28 |