- Transcript 'Cisavi.CG.ENS81.R41....' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'Moocci.CG.ELv1_2.S47...' >
- Transcript 'Moocci.CG.ELv1_2.S41...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1889.g15856.01.t
Possible name(s)
H2AFX; HIST1H2AA; HIST2H2AB
Gene model
Location
S1889 [25,765 / 26,143]
Amino acid sequence
Length: 125
>Phmamm.CG.MTP2014.S1889.g15856.01.p
MSGRGKGGGKSKAKPKSRSSRAGLQFPVGRVHRLLRNGNYSDRVGAGAPVYLAAVLEYLS
AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTVAQGGVLPNIQAVLLPKK
TSKKA
Nucleotide sequence
Length: 378
>Phmamm.CG.MTP2014.S1889.g15856.01.t
ATGTCAGGACGTGGAAAAGGTGGCGGTAAGTCCAAGGCAAAGCCAAAGAGCAGATCGTCG
CGCGCTGGGCTGCAGTTCCCAGTCGGTCGTGTGCACAGATTGTTGCGCAACGGCAACTAC
TCGGACCGGGTGGGAGCTGGTGCGCCCGTGTATCTGGCCGCGGTGCTTGAATACCTTAGC
GCCGAGGTTCTCGAGTTGGCCGGCAACGCAGCCCGCGACAACAAGAAGACCCGCATCATC
CCGCGCCACTTGCAGTTGGCCATCCGCAACGACGAGGAGCTGAACAAGCTGCTCAGCGGT
GTCACCGTTGCCCAGGGCGGCGTCCTGCCCAATATACAAGCCGTCCTTCTGCCAAAGAAG
ACCTCCAAGAAAGCCTAA
| Gene3D |
Histone-fold (IPR009072) - T[1-125] 4.4E-67 |
| SMART |
Histone_H2A (IPR002119) - T[3-123] 8.2E-81 |
| SUPERFAMILY |
Histone-fold (IPR009072) - T[4-124] 1.27E-45 |
| Pfam |
Histone_H2A/H2B/H3 (IPR007125) - T[9-89] 3.9E-16 |
| PRINTS |
Histone_H2A (IPR002119) - T[14-36] 1.6E-55 - T[43-58] 1.6E-55 - T[58-71] 1.6E-55 - T[72-86] 1.6E-55 - T[100-118] 1.6E-55 |
| CDD |
Histone_H2A (IPR002119) - T[17-120] 4.67926E-67 |
| ProSitePatterns |
Histone_H2A_CS (IPR032458) - T[22-28] . |
| Pfam |
Histone_H2A_C (IPR032454) - T[92-125] 5.9E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| H2A1A_HUMAN | 88.43 % | 222 | 1.5E-76 |
| H2A2B_HUMAN | 89.344 % | 222 | 1.11E-76 |
| H2AX_HUMAN | 90.164 % | 224 | 4.51E-77 |