Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S191.g05059.01.t

Possible name(s)

LEMD3; RBM23; RBM39

Gene model

Phmamm.CG.MTP2014.S191.g05059

Location

S191 [12,796 / 14,206]

Sequences

Amino acid sequence

Length: 469

>Phmamm.CG.MTP2014.S191.g05059.01.p
MADDIDVEAMLEAPFQKENSMSKEKDRKKSDRKSRKRSRSRSRSKSHRHRRSRSRSKDRH
RRRRSRSHERRRKKSRSPRHRSPRRKEKTPTPPPKPRSPSPPDRDARTIFCYQLAQRIRT
RDLEEFFSAVGKVREVKLIQDKHSKRSKGIAYVEFKDLESVPLALGLSGQKVLGVPIVVQ
PTQSEKNKVAAAQMTLQQAARGPTRLYVGSLHENITEEMLKGIFSPFGRIEQVQIVKDQD
TGVSKGYAFITFAEADCAKRALDQLNGFEIAGKPIKLNTVGSAMDLTALSAFAGGPSFLD
NDAVERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQHALQLGQSMGLGLPQAQSAANTAP
PIATTCFQLSNMFDPQNESGNDWDKEIANDVIEECSRHGQVFHCFVDRESKGNVYVKCDT
TEAASKSVNALHGRYFAGNMITAAYVPLINYHSLFPDAAYAKAAIKPNR

Nucleotide sequence

Length: 1,410

>Phmamm.CG.MTP2014.S191.g05059.01.t
ATGGCAGATGACATTGATGTAGAAGCTATGCTGGAGGCTCCATTCCAAAAGGAAAACTCC
ATGAGCAAAGAAAAAGATAGGAAAAAAAGTGATCGCAAATCACGTAAACGCAGTCGCAGC
AGAAGTCGAAGCAAGAGCCACCGCCACAGAAGGTCACGATCCAGGAGCAAAGATAGGCAT
CGTCGCAGGAGAAGTAGATCACATGAACGCAGGCGCAAAAAGAGTAGGTCCCCAAGACAT
CGCAGCCCACGCAGAAAGGAAAAGACCCCTACTCCACCTCCGAAACCCAGGTCTCCAAGT
CCACCTGATCGTGATGCCAGAACTATATTCTGTTACCAACTGGCCCAACGAATTCGCACA
AGAGATCTTGAGGAGTTTTTCTCCGCTGTTGGAAAAGTTCGTGAGGTGAAACTCATCCAG
GACAAGCACTCGAAGCGCTCAAAGGGTATCGCTTATGTGGAGTTCAAGGATTTGGAGTCT
GTGCCTTTGGCTCTTGGTTTGAGTGGTCAAAAGGTTCTTGGTGTTCCTATTGTGGTACAG
CCCACACAATCTGAAAAGAACAAGGTTGCTGCAGCTCAAATGACTTTGCAGCAAGCTGCT
CGTGGGCCCACGCGGCTTTACGTAGGGTCACTTCACGAAAATATCACAGAGGAGATGCTA
AAGGGAATCTTTTCACCGTTTGGTCGCATTGAGCAGGTTCAAATCGTCAAAGATCAGGAT
ACAGGTGTCTCAAAAGGATATGCATTTATAACCTTCGCAGAGGCAGATTGCGCCAAGCGA
GCTCTTGACCAGCTGAATGGATTTGAAATAGCAGGAAAACCGATTAAGCTTAATACCGTC
GGCAGTGCTATGGATCTGACAGCCTTGTCTGCTTTTGCTGGTGGCCCCTCGTTTCTCGAT
AATGATGCTGTGGAAAGGGCAGGCATCGATCTTGGCACAACCGGACGACTGCAGCTAATG
GCAAAGCTGGCAGAAGGCACTGGTTTGGAAGTTCCGAGTGCCGCGCAACACGCTTTGCAG
TTGGGTCAATCTATGGGTCTTGGTCTCCCACAGGCTCAAAGTGCAGCCAACACTGCCCCA
CCCATCGCTACCACATGCTTCCAGCTGTCAAATATGTTTGATCCACAGAATGAGAGCGGC
AACGACTGGGATAAAGAAATAGCGAACGACGTGATTGAGGAGTGCTCACGTCACGGCCAG
GTCTTTCATTGTTTTGTTGACAGGGAGTCGAAGGGAAACGTCTACGTCAAATGCGACACC
ACGGAGGCTGCCAGCAAGTCTGTAAATGCATTACACGGGCGTTACTTCGCCGGTAACATG
ATTACGGCGGCATACGTTCCCCTCATCAACTACCACTCACTCTTTCCGGATGCGGCATAC
GCCAAGGCGGCCATTAAGCCCAACCGATGA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-192] 9.3E-23 - T[193-285] 3.6E-26 - T[359-469] 3.6E-31
TIGRFAM	RBM39_SF (IPR006509) - T[17-457] 3.3E-143
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[31-181] 1.48E-22 - T[203-445] 1.49E-31
ProSiteProfiles	RRM_dom (IPR000504) - T[107-184] 14.914 - T[204-282] 19.979
SMART	RRM_dom (IPR000504) - T[108-180] 2.2E-15 - T[205-278] 1.3E-28 - T[366-444] 0.51
Pfam	RRM_dom (IPR000504) - T[109-174] 4.6E-12 - T[206-276] 1.0E-22
Pfam	RBM39_linker (IPR029123) - T[302-383] 3.5E-23

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
MAN1_HUMAN	39.823 %	97.8	1.75E-21
RBM39_HUMAN	52.985 %	489	1.44E-170
RBM23_HUMAN	44.719 %	328	2.05E-108