Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S193.g05098.02.t

Possible name(s)

SNF8

Gene model

Phmamm.CG.MTP2014.S193.g05098

Location

S193 [51,883 / 53,388]

Sequences

Amino acid sequence

Length: 201

>Phmamm.CG.MTP2014.S193.g05098.02.p
MRRRGVGASAVTKKKLESARYKERGTELAAQQLEQLSSQLETFHTNLEEFAAKHKNEIRK
DPQFRHQFQQMCASIGVDPLASGKGFWSEMLGVGDFYYELGVQAVEICIATRSQNGGILT
MDELHKRLMKTRGRYGQDITQEDIRTAIKKLKVLGTGFALLGSASKQIIQSVPGELNMDH
TAILDLAQQLICYNMVTHCLS

Nucleotide sequence

Length: 774

>Phmamm.CG.MTP2014.S193.g05098.02.t
CGCGGTATGAATAATGAACTGACTCGCACGGTAAACGTATGCTGTTTTAACGAATGAAAC
ACACGAATGAAAATATGGGCCTTGATTCCATTGTTTTATGTCTGGTTTTATTAGCTGCCA
TTGCAACTTGTCTGTTTGCTTGTATCGGTAGGTCCTGCTGATAAAACGTGATGAGGCGGC
GTGGTGTCGGAGCAAGTGCTGTAACAAAAAAGAAGCTTGAAAGTGCCCGCTACAAAGAAC
GTGGTACTGAGTTGGCTGCACAACAGTTGGAACAATTAAGCAGTCAATTAGAAACTTTTC
ACACTAACTTGGAAGAATTTGCTGCCAAGCACAAGAATGAAATTAGAAAAGATCCGCAGT
TCCGGCACCAATTCCAGCAAATGTGTGCATCAATAGGAGTTGACCCATTAGCATCTGGAA
AAGGATTTTGGTCGGAAATGCTTGGTGTTGGAGATTTTTATTATGAACTTGGTGTTCAGG
CAGTTGAAATTTGTATCGCAACACGATCACAAAATGGAGGAATCTTGACAATGGATGAGT
TGCATAAAAGACTTATGAAAACACGGGGAAGGTATGGACAAGATATTACACAAGAGGACA
TCAGGACAGCTATAAAAAAATTGAAGGTACTGGGAACAGGTTTTGCATTACTTGGCTCGG
CTAGTAAACAGATTATTCAATCAGTCCCTGGAGAGCTCAACATGGATCACACAGCCATAT
TGGATCTTGCCCAACAATTGATCTGTTACAATATGGTCACACACTGTCTAAGCT

InterProScan

PANTHER	ESCRT-2_cplx_Snf8 (IPR016689) - T[1-190] 1.1E-81
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[25-175] 4.62E-51
Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[92-172] 2.1E-30

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SNF8_HUMAN	65.079 %	274	5.52E-94