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  1. Transcript 'KH2012:KH.C10.45.v2....' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Harore.CG.MTP2014.S2...' > 
  4. Transcript 'KH2012:KH.C5.42.v3.A...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1995.g16028.01.t

Possible name(s)

CDH2; CDH4; CDH6

Gene model

Phmamm.CG.MTP2014.S1995.g16028

Location

S1995 [5,074 / 14,879]

Sequences

Amino acid sequence

Length: 538

>Phmamm.CG.MTP2014.S1995.g16028.01.p
MKSIISATFCLLLFLLVAIDCGNTEGLSKVLRRQKRAWSYPEVNLQETEKGQENRFTPKR
AAQIKSDNVHVTKYIFDPLNPYFEMRSKASVGEIWQMLPLDREETPIVKLFAYALDQSGI
AVEPDPAVIQINVLDVNDCKPKFDQTTLNGNVDEDVTSGAPSFMTIKATDDDSSENDYNV
VRFYYGGNEKPPSSSGPRFAVAQNGAVSVIGPLDYETVPEITFNIIAKDGYEGSSSEHIV
NTTVTVKINDVNDHAPVYTNEQPYRKDVGELTDLQTVLLKVFATDADSGINKEVSFRITD
GDPTGTFSVKSYPSSTGTSHGDIILEKPLDYESGVTSYLLTVEAYNAEATNGENPLYKDT
TQVRINVDDQNEPPVFKNVPYTATVTENEGNVDLMTVLAEDPDLGGVQIVSYSLQNGQSW
FSIDPSSGLVRTINDGIDRENPLVKNSQYTLTVIATDNAPIPLQNTSDILVTIIDVNDNA
PEIKEQAFTVCEKPESSQIGNLTIVDKDEPKNGPPFTYKSLDEEKWLVEGGRSIIKSY

Nucleotide sequence

Length: 3,831

>Phmamm.CG.MTP2014.S1995.g16028.01.t
GACGGCTGTTCTCAAGTTGATGAAAGATTTTATTTTTTGTTGTGTTTGATGTGACATAAC
TCATATTGAGAACTGAAGAAGACAGAACCGACGTAACATAAGGGGTGATTAAAAAACTCA
GCAAGACAGTCACCGGATACTTGGATTATGAAGTCCATCATCTCAGCAACATTCTGTCTT
TTGTTATTTTTGCTGGTTGCCATTGATTGCGGAAACACAGAAGGATTATCTAAAGTCCTG
CGCAGGCAGAAGCGAGCATGGTCATATCCTGAAGTTAACTTACAAGAAACTGAAAAAGGA
CAGGAGAATAGGTTTACACCAAAACGAGCAGCTCAGATTAAATCTGACAATGTACATGTG
ACCAAGTATATATTTGATCCATTAAATCCTTATTTTGAAATGAGATCCAAAGCATCTGTT
GGTGAAATATGGCAAATGTTGCCTTTGGACAGAGAGGAAACGCCTATAGTGAAGCTTTTT
GCTTATGCTTTGGACCAATCAGGGATTGCGGTGGAACCAGATCCCGCAGTAATACAAATT
AATGTCCTTGATGTAAACGATTGTAAGCCCAAATTTGACCAGACAACATTAAATGGGAAT
GTGGATGAAGATGTAACATCAGGTGCACCTTCCTTTATGACTATCAAAGCCACAGATGAT
GACTCTTCAGAGAATGATTACAATGTAGTTAGATTTTATTATGGTGGGAACGAAAAACCA
CCTTCGAGCTCTGGCCCACGCTTTGCTGTTGCTCAGAATGGCGCTGTGTCAGTTATTGGA
CCCCTTGATTATGAAACAGTACCTGAAATTACTTTTAACATCATAGCAAAAGATGGCTAT
GAAGGGTCCTCAAGTGAACACATTGTTAACACGACAGTAACAGTGAAAATCAATGATGTC
AATGATCATGCACCTGTGTACACCAATGAACAACCCTATAGGAAAGACGTTGGTGAACTG
ACAGATTTACAGACAGTCTTATTAAAAGTGTTCGCCACAGATGCTGATTCAGGAATAAAC
AAAGAGGTTTCTTTCCGAATTACTGATGGAGACCCAACAGGCACATTTTCAGTGAAGTCA
TACCCAAGTAGCACTGGCACAAGTCATGGAGATATCATTTTGGAGAAACCACTAGACTAT
GAAAGTGGGGTAACTTCTTACCTGCTTACAGTGGAAGCTTACAATGCAGAAGCTACAAAC
GGGGAAAACCCTTTGTACAAAGACACCACCCAAGTAAGGATCAATGTAGATGATCAAAAT
GAACCACCAGTTTTCAAGAATGTTCCATATACTGCCACTGTTACTGAAAATGAGGGTAAC
GTTGACCTGATGACTGTTCTTGCAGAGGATCCTGATTTGGGAGGCGTCCAAATTGTTTCA
TATTCGTTGCAAAATGGCCAATCCTGGTTTTCCATAGATCCAAGCTCAGGTTTAGTCAGA
ACTATAAACGATGGAATTGATCGGGAAAATCCATTGGTTAAAAACAGTCAATACACCTTG
ACAGTGATTGCAACCGACAATGCACCAATACCACTGCAAAATACATCAGACATATTAGTG
ACAATCATTGATGTAAATGACAATGCTCCAGAAATCAAAGAACAGGCATTTACAGTTTGT
GAAAAACCGGAATCATCACAAATTGGCAATTTGACTATTGTTGATAAGGACGAGCCTAAA
AATGGTCCTCCATTTACTTACAAATCTCTGGATGAGGAAAAATGGCTTGTGGAAGGAGGT
AGGTCTATTATAAAGTCGTATTAGGTCGAGAATTTTTTGAGAAAATATTTATAAAATACA
ATTGTTGCCTTTCAGTGTCAGATTACAAAGCTGTGCTTTTGACTATGGTTAAGAACTTTG
ATGCAACCGAACAGAGTGAATATCCAGTTGTAATTGAAATCGCAGATTCACAAGGTGTTG
TTGGAACAAGCACAGTAACCGTGTCAATTTGCAGCTGTGACAACTCAGGAGTTTGTTATA
CAGCTGTTCCCCAAGCAGCTGGTGTTTCTGTGCCAATTATTGTGGCTATTATTGCTGCTA
TTCTTATTTTACTCATCATTGTACTGGCTGTGGTGGCATATCGACGAAGGCAAAAAGCTG
ACTTGGAAAAACAAGCCTTGTTTATTGACGATGACGATGTGAGAGAAAACCTTCAAGCTT
ACCACGATGAGGGTGGCGGCGAAGAAGACAATGATGGTTTTGACATAAGTGCGTTGCAAG
CACCACCACTGCCGAAACCAAAACGAGTAGATGAGAAACCTCTGGGAGCTGAAATGCCAC
AGAAACTGAGAATTCCCCCTGACACAGACATTGGTGACTACATTACTGATGCAAAGCAAC
AAGCTGACAATGACCCCACTGCCCCACCTTTCGATTCTCTTCTTGTATTTGATTATGAGG
GTCAAGGTTCAGACGCAGGGTCTCTGAGTTCCCTTAACTCTGGCACCACTGATGGCTCAC
AGGATTACAACTACCTTAACAACTGGGGCCCTCGCTTCAAGAAGTTGGCTGACATGTATG
GTGGTGGTGAAGAAGAGGATTAATAAGGGTCGTGTTTTTAAATTGGAATAGGAGAGCACT
GCATGAGCACCCGAAGCTACTGACCAAAAATGACATTTTTTAAAACATTTTATCAAACGT
TTTTCGATTTAATTGAAACTGGACATTCCGGTCCTTGGTGATAAACAGACGGTGCCACAA
TCATTTTAGTGAAGTCCGTGTACTTTTTATATGTGTGCTCGCTTTTTTATGTCATGAAAC
CCACTGTAAGTGGACCAATTTCTGTATATATGGTTATTGCTTTAGTTTCGACAATCTGCG
TTTGGTCAGTTCTTCTGCGACTTGTTACCGACACATGCGAGAATCGGCCGCTTTGTATAT
TGGAAAAAACTTATATCCTTCGGCGGCATAAATGTACTGTATTGATTTTTTGTTGCATCA
CTGAAAACATTTATGATTAACTACGGTTTCATATTTATAATTTTGTATCGCGAACTTGTG
CTTGTTAATCATTTATCGATCTTAACGGTTTTTATTGGCGCGCCCACGCATATGTGTGTG
AATTTGTTTGCCCTAATTAGCCTTCTGTACGTTCCCCCCCCCCAAATCACAACCCATTCC
CTAACAGAAATGAATTTGTATGATTTTTTTTTACAATTAATCGAAGAGCATTTTTTAGTG
TCAAAGACATGTTGCATTATGACTAGTAAAAAGTCCAGTTACCTTTGTTTCCGCTGTAAT
CAGTCAATCCCCCCCCCCACTGAAAACATTTATGATTAACTACGGTTTCATATTTATAAT
TTTGTACCGCAAACTTGTGCTTGTTAATCATTTATCCATCTTAACGGTTTTTATGTGCGC
GCCCACGCATGTGTGTGAATTTGTTTGCCCTAATTAGCCTTCTGTATGTGATCAAACCCA
TTTATCCCTAATGCATTTTTTATGAATCACTTGTTGCGACCAACGACCAATAACAGAAAT
CACAACCCATTCCCTAACAGAAATGAATTTGTATGATTTTTTTTACAATTAATCGAAGAG
CATTTTTTAGTGTAAAAGATATGTTGCATTATGACTAGTAAAAAGTCCAGTTACCTTTGT
TTCTGCTGTAATCAGTCAAAGAGCAGTTTGCTACTCCTGTGTGTTTTAGTTCGCTGTACA
TAACTCCAGCGCGTTTTTTATCAGTGTAGTGTTAATATCCCCCTGTGCTCGCTCCCACAA
TGTTTGCTGCCCCAGGTTTTCACTTCACGGAAAAGCCTAATAGCACGGTCGACCTTGAAA
GGTCCAAATCGATTCGTGCCTTTCCACAATAAAACAGCTTCGTGTCGGGAA

InterProScan

SMART
Cadherin (IPR002126) - T[59-141] 0.022 - T[166-256] 2.8E-12 - T[281-375] 1.2E-11 - T[397-481] 3.6E-23
SUPERFAMILY
Cadherin-like (IPR015919) - T[88-143] 2.28E-6 - T[137-258] 1.57E-15 - T[251-369] 9.16E-16 - T[371-483] 2.75E-21
PRINTS
Cadherin (IPR002126) - T[122-141] 1.4E-14 - T[141-154] 1.4E-14 - T[203-229] 1.4E-14 - T[465-482] 1.4E-14
Pfam
Cadherin (IPR002126) - T[151-245] 7.5E-8 - T[268-367] 7.5E-12 - T[381-473] 1.7E-14
ProSitePatterns
Cadherin_CS (IPR020894) - T[246-256] . - T[471-481] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CADH4_HUMAN 33.597 % 181 1.04E-48
CADH2_HUMAN 31.621 % 185 2.83E-50
CADH3_HUMAN 32.634 % 178 5.77E-48





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