- Transcript 'KH2012:KH.C7.190.v3....' >
- Transcript 'KH2012:KH.C7.139.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1995.g16028.02.t
Possible name(s)
CDH2; CDH4; CDH6
Gene model
Location
S1995 [6,362 / 14,416]
Amino acid sequence
Length: 746
>Phmamm.CG.MTP2014.S1995.g16028.02.p
MKSIISATFCLLLFLLVAIDCGNTEGLSKVLRRQKRAWSYPEVNLQETEKGQENRFTPKR
AAQIKSDNVHVTKYIFDPLNPYFEMRSKASVGEIWQMLPLDREETPIVKLFAYALDQSGI
AVEPDPAVIQINVLDVNDCKPKFDQTTLNGNVDEDVTSGAPSFMTIKATDDDSSENDYNV
VRFYYGGNEKPPSSSGPRFAVAQNGAVSVIGPLDYETVPEITFNIIAKDGYEGSSSEHIV
NTTVTVKINDVNDHAPVYTNEQPYRKDVSFRITDGDPTGTFSVKSYPSSTGTSHGDIILE
KPLDYESGVTSYLLTVEAYNAEATNGENPLYKDTTQVRINVDDQNEPPVFKNVPYTATVT
ENEGNVDLMTVLAEDPDLGGVQIVSYSLQNGQSWFSIDPSSGLVRTINDGIDRENPLVKN
SQYTLTVIATDNAPIPLQNTSDILVTIIDVNDNAPEIKEQAFTVCEKPESSQIGNLTIVD
KDEPKNGPPFTYKSLDEEKWLVEGVSDYKAVLLTMVKNFDATEQSEYPVVIEIADSQGVV
GTSTVTVSICSCDNSGVCYTAVPQAAGVSVPIIVAIIAAILILLIIVLAVVAYRRRQKAD
LEKQALFIDDDDVRENLQAYHDEGGGEEDNDGFDISALQAPPLPKPKRVDEKPLGAEMPQ
KLRIPPDTDIGDYITDAKQQADNDPTAPPFDSLLVFDYEGQGSDAGSLSSLNSGTTDGSQ
DYNYLNNWGPRFKKLADMYGGGEEED
Nucleotide sequence
Length: 2,241
>Phmamm.CG.MTP2014.S1995.g16028.02.t
ATGAAGTCCATCATCTCAGCAACATTCTGTCTTTTGTTATTTTTGCTGGTTGCCATTGAT
TGCGGAAACACAGAAGGATTATCTAAAGTCCTGCGCAGGCAGAAGCGAGCATGGTCATAT
CCTGAAGTTAACTTACAAGAAACTGAAAAAGGACAGGAGAATAGGTTTACACCAAAACGA
GCAGCTCAGATTAAATCTGACAATGTACATGTGACCAAGTATATATTTGATCCATTAAAT
CCTTATTTTGAAATGAGATCCAAAGCATCTGTTGGTGAAATATGGCAAATGTTGCCTTTG
GACAGAGAGGAAACGCCTATAGTGAAGCTTTTTGCTTATGCTTTGGACCAATCAGGGATT
GCGGTGGAACCAGATCCCGCAGTAATACAAATTAATGTCCTTGATGTAAACGATTGTAAG
CCCAAATTTGACCAGACAACATTAAATGGGAATGTGGATGAAGATGTAACATCAGGTGCA
CCTTCCTTTATGACTATCAAAGCCACAGATGATGACTCTTCAGAGAATGATTACAATGTA
GTTAGATTTTATTATGGTGGGAACGAAAAACCACCTTCGAGCTCTGGCCCACGCTTTGCT
GTTGCTCAGAATGGCGCTGTGTCAGTTATTGGACCCCTTGATTATGAAACAGTACCTGAA
ATTACTTTTAACATCATAGCAAAAGATGGCTATGAAGGGTCCTCAAGTGAACACATTGTT
AACACGACAGTAACAGTGAAAATCAATGATGTCAATGATCATGCACCTGTGTACACCAAT
GAACAACCCTATAGGAAAGACGTTTCTTTCCGAATTACTGATGGAGACCCAACAGGCACA
TTTTCAGTGAAGTCATACCCAAGTAGCACTGGCACAAGTCATGGAGATATCATTTTGGAG
AAACCACTAGACTATGAAAGTGGGGTAACTTCTTACCTGCTTACAGTGGAAGCTTACAAT
GCAGAAGCTACAAACGGGGAAAACCCTTTGTACAAAGACACCACCCAAGTAAGGATCAAT
GTAGATGATCAAAATGAACCACCAGTTTTCAAGAATGTTCCATATACTGCCACTGTTACT
GAAAATGAGGGTAACGTTGACCTGATGACTGTTCTTGCAGAGGATCCTGATTTGGGAGGC
GTCCAAATTGTTTCATATTCGTTGCAAAATGGCCAATCCTGGTTTTCCATAGATCCAAGC
TCAGGTTTAGTCAGAACTATAAACGATGGAATTGATCGGGAAAATCCATTGGTTAAAAAC
AGTCAATACACCTTGACAGTGATTGCAACCGACAATGCACCAATACCACTGCAAAATACA
TCAGACATATTAGTGACAATCATTGATGTAAATGACAATGCTCCAGAAATCAAAGAACAG
GCATTTACAGTTTGTGAAAAACCGGAATCATCACAAATTGGCAATTTGACTATTGTTGAT
AAGGACGAGCCTAAAAATGGTCCTCCATTTACTTACAAATCTCTGGATGAGGAAAAATGG
CTTGTGGAAGGAGTGTCAGATTACAAAGCTGTGCTTTTGACTATGGTTAAGAACTTTGAT
GCAACCGAACAGAGTGAATATCCAGTTGTAATTGAAATCGCAGATTCACAAGGTGTTGTT
GGAACAAGCACAGTAACCGTGTCAATTTGCAGCTGTGACAACTCAGGAGTTTGTTATACA
GCTGTTCCCCAAGCAGCTGGTGTTTCTGTGCCAATTATTGTGGCTATTATTGCTGCTATT
CTTATTTTACTCATCATTGTACTGGCTGTGGTGGCATATCGACGAAGGCAAAAAGCTGAC
TTGGAAAAACAAGCCTTGTTTATTGACGATGACGATGTGAGAGAAAACCTTCAAGCTTAC
CACGATGAGGGTGGCGGCGAAGAAGACAATGATGGTTTTGACATAAGTGCGTTGCAAGCA
CCACCACTGCCGAAACCAAAACGAGTAGATGAGAAACCTCTGGGAGCTGAAATGCCACAG
AAACTGAGAATTCCCCCTGACACAGACATTGGTGACTACATTACTGATGCAAAGCAACAA
GCTGACAATGACCCCACTGCCCCACCTTTCGATTCTCTTCTTGTATTTGATTATGAGGGT
CAAGGTTCAGACGCAGGGTCTCTGAGTTCCCTTAACTCTGGCACCACTGATGGCTCACAG
GATTACAACTACCTTAACAACTGGGGCCCTCGCTTCAAGAAGTTGGCTGACATGTATGGT
GGTGGTGAAGAAGAGGATTAA
| SMART |
Cadherin (IPR002126) - T[59-141] 0.022 - T[166-256] 2.8E-12 - T[257-349] 0.013 - T[371-455] 3.6E-23 - T[476-557] 0.1 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[88-143] 3.71E-6 - T[131-260] 6.67E-18 - T[251-343] 1.06E-6 - T[345-457] 4.45E-21 - T[451-554] 2.28E-12 |
| PRINTS |
Cadherin (IPR002126) - T[122-141] 4.7E-14 - T[141-154] 4.7E-14 - T[203-229] 4.7E-14 - T[439-456] 4.7E-14 |
| Pfam |
Cadherin (IPR002126) - T[151-245] 1.2E-7 - T[355-447] 2.8E-14 - T[461-550] 2.1E-7 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[246-256] . - T[445-455] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[602-741] 1.3E-49 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[651-745] 6.0E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 37.629 % | 355 | 7.09E-110 |
| CADH6_HUMAN | 34.33 % | 299 | 4.59E-90 |
| CADH2_HUMAN | 35.077 % | 332 | 1.27E-101 |