- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S19.g00789.01.t
Possible name(s)
PGAM5; SNRPA; SNRPB2
Gene model
Location
S19 [112,380 / 115,801]
Amino acid sequence
Length: 404
>Phmamm.CG.MTP2014.S19.g00789.01.p
MKRHLWKMVGLAATGGATVSVIKYSGWNKKEQKSYNLFSPFLKTAHAAVSEASKWDNDWD
KRACDKSTATRHIILIRHGQYNLAGKGDEERYLTSLGKEQASLTGLRLKELGLDKKLNLV
TYSTMTRAKETCDLIYKQLDAPITLEKSDLLREGAPIEPDPPTPHWAPDPKTFFIDSARI
ETAFRHFMHRADPDQKDDSYEILFGQILEIIAMKTLKMRGQAFVVFKDINSATNALRSMQ
GFPFYDKPMKLSYAKKDSDVIAKLKGTFQERTKEKKKRKKEPKKVANSTKSYIILLNDII
PIFLQPKQQASAQGNGAKGNEEGGKFGPNHILFLQNLPAETQEGMLSALFSRFMGYKEVR
PVPGRHDIAFVEFENEQQAADAKSALQGFKVSPDHAMKVTFAKK
Nucleotide sequence
Length: 1,215
>Phmamm.CG.MTP2014.S19.g00789.01.t
ATGAAGCGACATTTGTGGAAGATGGTGGGGCTAGCAGCAACAGGAGGTGCTACAGTTTCC
GTTATTAAATACTCTGGGTGGAATAAAAAGGAACAAAAGTCATACAACCTATTCTCTCCT
TTCTTAAAAACTGCACATGCTGCTGTTTCTGAAGCTTCAAAATGGGACAACGACTGGGAC
AAACGCGCTTGTGACAAATCAACAGCAACACGGCATATCATTTTGATTCGCCATGGACAG
TATAATTTAGCTGGTAAAGGGGACGAAGAGAGGTATTTGACCAGTTTGGGAAAAGAACAA
GCCTCTTTAACTGGCCTGAGGTTAAAAGAATTGGGTTTAGACAAGAAACTGAATTTAGTT
ACATATTCCACAATGACAAGAGCTAAAGAAACTTGTGATCTAATTTACAAACAGCTTGAT
GCTCCAATCACTCTGGAAAAGTCAGATTTGCTGAGGGAAGGTGCTCCTATTGAGCCTGAC
CCTCCAACACCTCATTGGGCACCGGATCCTAAGACATTTTTTATTGACAGCGCCCGCATA
GAAACTGCATTCCGTCATTTCATGCACCGAGCAGACCCAGACCAGAAGGATGACTCCTAC
GAGATTCTTTTTGGGCAAATTCTGGAGATTATTGCCATGAAAACTTTGAAGATGCGAGGG
CAGGCTTTTGTGGTTTTTAAAGACATCAATAGTGCTACAAATGCCCTACGCTCCATGCAA
GGATTTCCATTTTATGACAAACCTATGAAACTTTCGTATGCCAAAAAAGATTCTGACGTT
ATTGCGAAATTGAAGGGCACATTTCAAGAACGCACAAAGGAAAAGAAGAAGAGAAAGAAG
GAACCAAAGAAGGTTGCTAACAGCACAAAATCATACATCATATTGCTAAATGATATTATT
CCCATATTTTTGCAGCCCAAGCAACAAGCATCTGCACAAGGCAATGGAGCCAAAGGAAAT
GAGGAAGGTGGTAAATTTGGTCCAAACCATATTTTGTTTCTTCAAAACTTGCCTGCTGAG
ACACAGGAAGGAATGCTGAGTGCACTGTTTAGTCGGTTCATGGGATATAAGGAGGTAAGA
CCTGTGCCTGGTCGACACGACATTGCTTTTGTGGAATTCGAAAACGAGCAGCAGGCAGCA
GATGCAAAGAGTGCTCTTCAAGGTTTTAAAGTATCACCAGACCATGCAATGAAAGTTACA
TTTGCCAAGAAATAG
| Gene3D |
His_PPase_superfam (IPR029033) - T[64-166] 6.0E-16 |
| SUPERFAMILY |
His_PPase_superfam (IPR029033) - T[70-192] 9.01E-17 |
| CDD |
His_Pase_superF_clade-1 (IPR013078) - T[72-153] 1.82668E-15 |
| Pfam |
His_Pase_superF_clade-1 (IPR013078) - T[73-153] 2.0E-9 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[171-256] 11.128 - T[330-404] 12.202 |
| SMART |
RRM_dom (IPR000504) - T[185-252] 1.3E-4 - T[331-400] 1.1E-9 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[192-277] 2.4E-17 - T[325-404] 1.6E-20 |
| Pfam |
RRM_dom (IPR000504) - T[204-249] 8.8E-6 - T[332-391] 6.3E-11 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[204-391] 1.02E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PGAM5_HUMAN | 46.821 % | 159 | 9.87E-46 |
| RU2B_HUMAN | 53.398 % | 210 | 2.87E-66 |
| SNRPA_HUMAN | 46.586 % | 211 | 6.31E-66 |