Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S201.g05246.02.t

Possible name(s)

FTSJ1; FTSJ3; MRM2

Gene model

Phmamm.CG.MTP2014.S201.g05246

Location

S201 [42,311 / 46,883]

Sequences

Amino acid sequence

Length: 300

>Phmamm.CG.MTP2014.S201.g05246.02.p
WRARSAFKLLHLDEEFNLFNDGVKRVVDLCAAPGSWSQVLTRKLRRPTDNGKSDAKIVAV
DLQAMAPLPGVIQIQGDITKVSTAESIISHFEGEPADLVVCDGAPDVTGLHDIDEYIQAQ
LLLAALNITTHVLKNGGTFVAKIFRGKDVSLLYAQLRLFFDKVTCAKPRSSRNSSIEAFV
VCEGYDPPEDYIPNMSNPLLDMDYDLYSNQLEGPNRVIAPFLACGDLSGYDSDKTYPLQL
EGGKEYKYLPPTQGPINPPYKHACELKSASQLAKEDSDGHVVAASSSQISTNVVSTCSVP

Nucleotide sequence

Length: 902

>Phmamm.CG.MTP2014.S201.g05246.02.t
TGGAGAGCAAGAAGTGCTTTTAAACTGTTGCATTTGGATGAAGAATTTAACTTGTTTAAT
GATGGAGTTAAAAGGGTAGTTGATCTCTGTGCAGCCCCTGGAAGCTGGAGTCAAGTGCTC
ACACGCAAACTAAGGAGACCTACAGATAATGGCAAAAGTGATGCCAAAATTGTTGCTGTT
GATTTACAGGCAATGGCTCCACTGCCTGGTGTAATACAAATCCAAGGCGACATTACAAAA
GTCTCAACTGCAGAAAGCATAATTTCTCACTTTGAAGGAGAGCCTGCTGACTTGGTGGTT
TGTGATGGAGCTCCAGATGTGACAGGTCTACATGATATCGATGAGTATATTCAAGCACAA
CTTTTACTTGCAGCACTGAATATTACTACTCATGTTCTAAAAAACGGTGGAACATTTGTT
GCGAAAATATTCAGAGGAAAAGATGTTTCCTTACTCTATGCACAGCTGAGGTTATTTTTT
GACAAAGTCACATGTGCCAAACCAAGAAGTTCAAGAAACTCAAGCATTGAGGCATTTGTT
GTATGTGAGGGTTACGATCCACCTGAAGACTACATACCAAATATGTCTAACCCGCTTCTT
GACATGGACTATGACTTGTATAGCAATCAACTGGAGGGACCAAATCGTGTTATTGCACCA
TTTCTTGCATGTGGTGATTTGAGTGGATATGATTCAGATAAAACTTATCCTTTACAGCTG
GAAGGCGGTAAGGAATACAAATACCTTCCTCCGACGCAAGGTCCAATTAATCCCCCTTAC
AAACACGCCTGTGAACTCAAATCTGCTTCACAGTTAGCCAAAGAGGATAGTGACGGTCAC
GTGGTGGCAGCATCGAGCAGTCAGATTTCAACTAACGTCGTATCGACATGTTCTGTACCT
GC

InterProScan

Pfam	rRNA_MeTrfase_FtsJ_dom (IPR002877) - T[1-185] 2.5E-70
Hamap	rRNA-MeTfrase_E (IPR015507) - T[1-186] 27.207
SUPERFAMILY	SAM-dependent_MTases (IPR029063) - T[1-185] 1.27E-36
PANTHER	RNA_methyltr_E_Trm7 (IPR028590) - T[1-276] 2.1E-127

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRM7_HUMAN	72.727 %	397	1.07E-139
SPB1_HUMAN	36.869 %	129	1.28E-33
MRM2_HUMAN	35.294 %	105	4.25E-27