- Clone 'ma104m06' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S208.g05382.02.t
Possible name(s)
AC011530.1; DMWD; WDR20
Gene model
Location
S208 [44,263 / 50,146]
Amino acid sequence
Length: 705
>Phmamm.CG.MTP2014.S208.g05382.02.p
MALEGASKDNDVKVRFNIREGIYKQMPISEYFYPKRVPYVNQGPASTSTTVKTSITRIDD
GDEDCDRVCFTVGRELFYFGYKSLVQPSQHLEFLDKRTYKGVQPTCHHINKFSASNETVK
VAVGFTAGQVQVIDVKTKQSLQIMNEDRSVEKSRVTCVKWLPESENVLLSAHASGNMYTY
DVSQPSTNALPIFHTQPHILGEGYTIYALKTKTTSSSTPSNGNGNNATTKNPLFKWIMAT
DGSGIHTFQFSPCGRFVAVAMQNGYLRVINHSTFEMHGCMKSYFGGLLSCSWSPDGRYIV
TGGEDDLVNVWSFCEKCVIARGYGHRSWVSEVSFDPFCCFYPNDSDMKMFYGMPSVADLY
PKHKALAGQDCANNNSCENVDNPTHSSTGMGDFVQRNNFSEDSRPHCNGEVGLMPHSNMR
RLRTYSNVSKFSRLSIGLDPCSPPICYRFGSVGQDAHLCLWEIDENILFNSRKNRPTVLT
TTQKRRPSVGSGGDCSAAYNSTTDSGSEVPVNGSSNSEYSSNGSYGQYHYYNNISGGNID
VSQLVTTAQSSNASNSGTSATLNLQKDKKHSRQNASNGVASKFATLGSHERKNKEGKEHK
RNLSLPHFSFRSTSNQNGGASTKYGILNKKAQPPQLIKTLGTTLCPKLDETTLLEPLVCK
KIAQSRITGINFMEDCIITTCQDGYLQLWKRPNPRATSPSPDKPK
Nucleotide sequence
Length: 2,118
>Phmamm.CG.MTP2014.S208.g05382.02.t
ATGGCTTTGGAGGGTGCAAGTAAAGACAATGATGTGAAAGTACGTTTCAACATCAGGGAG
GGAATTTACAAACAAATGCCGATTTCGGAATATTTTTACCCCAAAAGAGTGCCATATGTT
AACCAGGGTCCAGCATCTACCTCAACAACTGTTAAAACCTCCATCACAAGAATTGATGAT
GGAGATGAAGATTGCGACAGAGTTTGCTTCACTGTTGGCCGAGAGCTGTTCTACTTTGGA
TACAAGTCTCTTGTGCAGCCATCCCAGCACTTGGAGTTTCTCGACAAGAGAACTTACAAA
GGTGTTCAGCCCACATGTCATCACATAAACAAGTTTTCTGCATCAAATGAGACAGTGAAA
GTGGCTGTGGGTTTTACAGCTGGCCAGGTTCAAGTTATTGATGTGAAAACTAAACAGAGC
CTCCAAATTATGAATGAAGATAGGTCTGTTGAAAAGTCGAGGGTAACTTGTGTAAAGTGG
CTCCCAGAAAGTGAAAATGTTTTATTATCGGCCCATGCCAGTGGTAACATGTACACTTAT
GATGTGTCACAACCATCTACCAATGCCCTGCCAATATTTCACACCCAGCCTCACATACTT
GGTGAAGGTTACACCATTTATGCCCTCAAGACAAAAACCACATCTTCCTCCACACCGTCA
AATGGAAATGGGAACAATGCCACAACCAAAAACCCACTGTTTAAGTGGATTATGGCCACA
GATGGTTCTGGCATTCATACATTTCAGTTTTCACCTTGTGGTCGCTTTGTCGCTGTGGCC
ATGCAGAATGGCTACCTTCGAGTAATTAACCATTCCACCTTTGAAATGCACGGCTGCATG
AAGAGCTACTTTGGTGGATTACTTTCTTGTTCATGGAGCCCTGATGGACGCTATATAGTG
ACTGGTGGTGAGGATGATCTGGTCAATGTGTGGTCATTCTGTGAGAAATGCGTTATAGCT
CGTGGCTATGGACATCGATCATGGGTTAGCGAAGTATCATTTGATCCTTTCTGTTGTTTT
TATCCAAATGACAGTGACATGAAAATGTTTTATGGTATGCCAAGTGTGGCAGACCTATAT
CCAAAACACAAAGCCCTGGCTGGACAAGACTGTGCTAATAATAACTCCTGTGAAAATGTT
GACAACCCAACTCACAGTAGCACAGGTATGGGCGATTTCGTGCAAAGAAACAATTTTTCT
GAGGACAGCAGACCACATTGCAATGGCGAAGTTGGTCTCATGCCTCACAGTAATATGAGG
CGATTAAGGACATATAGCAATGTTTCGAAGTTTTCAAGACTAAGTATTGGTCTTGATCCA
TGTTCTCCACCCATATGCTATAGGTTTGGTTCAGTGGGCCAAGACGCTCACCTTTGCTTA
TGGGAAATCGACGAAAACATTTTATTTAATTCTCGTAAAAACAGACCCACTGTCCTTACA
ACCACCCAGAAGAGAAGGCCAAGTGTGGGTAGCGGTGGGGACTGCTCTGCTGCTTATAAT
AGCACAACAGACAGTGGTTCCGAAGTACCCGTGAATGGGTCATCAAACTCTGAGTACAGC
AGCAATGGGAGTTATGGACAGTATCACTATTACAATAATATTTCTGGTGGCAATATTGAT
GTTTCCCAGTTGGTAACAACAGCCCAATCGAGTAATGCCAGTAACTCTGGTACATCTGCC
ACGCTTAATCTGCAAAAAGACAAAAAGCATTCGAGACAAAATGCTTCCAATGGCGTTGCA
AGCAAGTTTGCAACACTTGGTTCCCACGAACGTAAAAACAAAGAGGGAAAAGAACACAAG
CGGAATTTGAGCCTTCCTCATTTCAGCTTTAGAAGCACTTCAAATCAGAATGGTGGTGCT
AGTACGAAGTATGGAATTTTGAACAAAAAGGCTCAACCACCCCAGCTGATCAAGACTCTT
GGGACAACACTCTGTCCAAAGTTGGACGAAACCACACTGCTTGAACCCCTTGTGTGTAAA
AAAATTGCCCAAAGTCGAATCACTGGCATTAACTTTATGGAAGACTGTATTATTACAACG
TGCCAAGATGGTTACTTACAACTATGGAAAAGACCTAACCCGCGTGCCACCTCGCCTTCA
CCTGACAAACCAAAATGA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[108-340] 2.11E-29 |
| SMART |
WD40_repeat (IPR001680) - T[137-181] 0.71 - T[229-270] 7.1 - T[273-312] 1.5E-4 - T[655-690] 17.0 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[238-336] 12.631 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[280-312] 11.411 |
| Pfam |
WD40_repeat (IPR001680) - T[287-312] 0.0016 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[644-697] 2.0E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR20_HUMAN | 37.946 % | 411 | 6.33E-136 |
| DMWD_HUMAN | 47.101 % | 266 | 1.87E-79 |