- Clone 'mae25b18' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S2098.g16191.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S2098 [9,122 / 15,150]
Amino acid sequence
Length: 481
>Phmamm.CG.MTP2014.S2098.g16191.01.p
MNNNTNSTTYPVASLYVGDLHPDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVK
FQLTADAERALDTMNYDPIKGRPIRIMVSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNILSCKVSCSDGVSKGYGFVHFETEEAALRAIDKVNGMLWNNNKVFVGKFLTRSE
RNKKMGERVRQFTNVYIKNFSDKLDDDQLKEMFGKYGCVKSVAVMKDSNGNSRGFGFVAF
ETHEEAQNAVEGLNGTEIENSNELLYVGRAQKKQEHQSELRSQFEQRKQDCIQRFQGVNL
YVKNLDDNINEEDLREAFNQYGTITSTKIDQECQTQTTFNPLPWQKNAESFFIASYRTEV
PEKSDQTNGHGNAIFDGQKQTFYSPEEATKAVTEMNGRIVGSKPLYVALAQRREDRKAHL
TAQYMQRMTNTMGVRMGTQRTYVPSHIIRATPRWQTPAQASFQVTLILVLLWIPFPEGDT
Y
Nucleotide sequence
Length: 1,446
>Phmamm.CG.MTP2014.S2098.g16191.01.t
ATGAACAACAACACCAATTCCACCACCTATCCAGTGGCTTCTTTGTATGTTGGTGACTTG
CATCCTGATGTTACTGAGGCCATGCTCTATGAGAAGTTTTCTCAAGCTGGTCCAGTTCTT
TCTATCCGTGTTTGTCGGGATGTCATCACACGTAGATCACTTGGTTATGCTTATGTTAAA
TTTCAGCTGACAGCTGATGCTGAGCGGGCATTGGACACTATGAACTATGATCCAATCAAG
GGTCGTCCAATTCGTATCATGGTGAGTCAGCGAGACCCATCTCTCCGCAAATCTGGTGTT
GGCAATATCTTCATTAAGAACTTGGATAAGTCCATCGACAACAAGGCCCTGTATGACACC
TTTTCTGCTTTCGGAAACATTCTTTCCTGCAAGGTGTCTTGCAGTGACGGTGTATCCAAA
GGTTATGGTTTTGTTCATTTTGAAACTGAAGAGGCTGCACTCCGTGCCATTGATAAGGTC
AATGGCATGTTATGGAACAACAACAAGGTATTTGTCGGAAAGTTTCTTACACGTTCTGAG
CGCAACAAGAAGATGGGGGAAAGAGTTCGCCAGTTTACGAATGTCTACATTAAAAACTTT
TCTGACAAACTGGATGATGATCAACTTAAGGAGATGTTTGGGAAATATGGCTGTGTTAAA
AGTGTTGCTGTTATGAAAGATAGTAATGGCAACTCGCGAGGCTTTGGTTTTGTGGCCTTT
GAGACACACGAGGAGGCACAAAATGCAGTTGAAGGCCTCAATGGAACAGAAATAGAAAAC
TCAAATGAGCTTTTGTATGTTGGCCGAGCTCAAAAGAAACAAGAGCACCAAAGCGAGTTG
CGCAGTCAGTTTGAGCAGCGAAAGCAAGATTGCATTCAGCGATTTCAAGGTGTCAATCTC
TATGTGAAAAACTTGGACGACAACATAAATGAGGAAGATCTTCGTGAGGCTTTTAACCAG
TATGGAACCATCACAAGTACCAAAATAGATCAGGAGTGTCAAACTCAAACAACTTTTAAC
CCGCTTCCATGGCAAAAAAATGCTGAGTCATTCTTTATTGCGTCCTATCGGACTGAAGTA
CCGGAAAAGTCCGATCAGACCAACGGCCATGGAAACGCGATATTTGACGGCCAAAAACAA
ACTTTTTATTCGCCTGAAGAAGCTACAAAAGCTGTGACTGAGATGAATGGTCGCATTGTT
GGCTCCAAACCACTGTATGTGGCATTGGCCCAGCGCAGAGAAGATCGTAAAGCCCACCTA
ACTGCTCAATACATGCAGAGAATGACAAACACTATGGGTGTTCGAATGGGTACACAAAGA
ACTTATGTCCCAAGTCATATAATCAGAGCTACACCAAGATGGCAGACGCCTGCCCAAGCA
AGCTTTCAGGTAACTTTAATCCTGGTGTTATTATGGATCCCCTTTCCTGAAGGGGACACA
TATTGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 6.6E-24 - T[95-184] 2.6E-21 - T[185-292] 7.2E-25 - T[293-340] 9.5E-9 - T[379-435] 2.9E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 17.216 - T[101-177] 15.392 - T[193-272] 19.792 - T[298-412] 11.452 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[13-181] 8.15E-47 - T[192-332] 6.05E-33 - T[381-437] 1.7E-7 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[13-332] 2.8E-152 |
| SMART |
RRM_dom (IPR000504) - T[14-87] 1.3E-21 - T[102-173] 5.3E-21 - T[194-268] 1.8E-22 - T[299-408] 1.8E-7 |
| Pfam |
RRM_dom (IPR000504) - T[15-85] 2.0E-19 - T[103-169] 2.7E-18 - T[195-261] 9.9E-21 - T[300-332] 5.0E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 61.184 % | 559 | 0 |
| PABP4_HUMAN | 58.071 % | 547 | 0 |
| PABP3_HUMAN | 57.415 % | 527 | 0 |