- Transcript 'KH2012:KH.L133.11.v1...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S213.g05486.01.t
Possible name(s)
RAB3IL1; RAB3IP; SND1
Gene model
Location
S213 [22,627 / 31,596]
Amino acid sequence
Length: 528
>Phmamm.CG.MTP2014.S213.g05486.01.p
MVEVETIDRAGNFIGWLFVDGVNMSQMLLENGLSRLHFTAERSSYYKSLLTAEQTAKEKG
LNMWENYEEPKQEEKVEEPTERKANYKNIFVTEVTSQLHLYCQHVDNGTQLDLLTEKMRS
FLISDPPLAGAYKPRRGEFCVAKFGEDGQWYRARVEKVEQHNDKVHVHYIDFGNKEVVPM
NRVSSLPAEYNTHILLPQAHEYALALIRVPEDADSAADAFRALCSMVGNSQFQLNVEYKD
GGSDFVTLTSADGETDVGRSLVSEGFCTVAKRGEKRLQKMLSEYYGEQEKAKKQHVRLYK
VVTLRAIGLDYYEMENEVEPNPKSILTLEKDKVSVENGVNSNGVDLFCATQMQLELDKLR
RELRDKNAECQRLQDSHIKVEAEIEDLTASLFEEANKMVYDANVKRHRAEKQLAEAKGNI
DALQTEVDALKSLVLTSTPSNPNRLSHPQLIEKKENKLMYTILLSWQPTPFNVQSDFFLN
LQIDALQTEVDALKSLVLTSTPSNPNRLSHPQLIEKKENKLKCNKSNE
Nucleotide sequence
Length: 1,587
>Phmamm.CG.MTP2014.S213.g05486.01.t
ATGGTTGAAGTTGAAACGATTGACCGAGCCGGCAACTTTATTGGTTGGCTGTTTGTGGAT
GGAGTGAATATGTCGCAAATGCTGTTGGAGAACGGACTGTCGCGTCTTCACTTCACGGCT
GAACGCAGCAGCTACTACAAGTCTTTACTTACAGCCGAACAAACTGCCAAAGAAAAGGGC
TTAAATATGTGGGAAAATTACGAAGAGCCAAAGCAGGAAGAAAAAGTGGAAGAACCAACA
GAGAGAAAAGCAAACTACAAGAATATATTTGTCACCGAAGTAACCTCACAATTACATCTC
TACTGCCAGCATGTGGACAACGGGACTCAACTTGATCTTCTAACTGAGAAGATGCGTAGT
TTTCTGATTTCGGATCCTCCTCTGGCGGGCGCCTACAAGCCTCGGCGTGGTGAATTCTGT
GTAGCGAAGTTTGGTGAAGACGGACAGTGGTACAGGGCACGGGTGGAGAAAGTCGAACAA
CACAACGACAAAGTTCACGTTCATTACATCGACTTTGGCAACAAAGAAGTGGTGCCGATG
AATCGAGTGAGTTCACTCCCTGCTGAGTATAACACTCACATTTTACTCCCTCAAGCTCAC
GAGTACGCACTGGCATTGATCCGAGTTCCTGAAGATGCTGATTCAGCTGCTGATGCATTC
CGGGCTCTCTGCTCAATGGTGGGAAATTCTCAGTTCCAATTAAACGTCGAATACAAAGAT
GGAGGAAGCGATTTTGTGACACTCACTAGTGCTGATGGTGAAACGGACGTGGGACGTTCC
TTGGTCAGCGAAGGATTCTGTACTGTGGCGAAAAGAGGCGAAAAACGTCTTCAGAAGATG
CTGAGCGAATATTACGGCGAGCAGGAGAAGGCCAAGAAACAACACGTTAGGTTGTACAAA
GTTGTAACACTTAGGGCCATTGGCTTGGATTATTACGAAATGGAAAATGAAGTTGAACCC
AATCCAAAATCCATTTTAACTTTGGAAAAGGACAAAGTTTCGGTCGAAAATGGAGTGAAT
TCAAACGGTGTTGATCTGTTTTGTGCCACTCAAATGCAGTTAGAATTGGACAAACTTCGA
AGGGAATTACGGGACAAAAATGCAGAGTGTCAACGTCTTCAAGACAGTCATATCAAGGTG
GAAGCTGAGATTGAAGATTTGACTGCAAGTTTATTTGAAGAGGCCAACAAAATGGTTTAT
GATGCAAATGTGAAGCGACACAGAGCGGAAAAACAGTTGGCTGAAGCAAAAGGAAATATT
GACGCATTGCAAACAGAGGTTGATGCTCTTAAGTCTCTTGTCCTTACGTCAACACCGAGC
AATCCAAACAGATTGTCCCACCCACAACTTATTGAGAAGAAGGAAAATAAACTAATGTAT
ACCATTCTTCTGTCATGGCAGCCAACACCATTCAATGTTCAATCTGATTTTTTTTTAAAT
TTGCAGATTGACGCATTGCAAACAGAGGTTGATGCTCTTAAGTCTCTTGTCCTTACGTCA
ACACCGAGCAATCCAAACAGATTGTCCCACCCACAACTTATTGAGAAGAAGGAAAATAAA
CTAAAATGCAACAAGTCAAATGAATAG
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[1-64] 2.7E-19 - T[82-284] 4.0E-71 |
| ProSiteProfiles |
Staphylococal_nuclease_OB-fold (IPR016071) - T[1-66] 16.693 |
| Pfam |
Staphylococal_nuclease_OB-fold (IPR016071) - T[3-66] 3.5E-9 |
| Pfam |
Tudor (IPR002999) - T[82-205] 1.6E-28 |
| SMART |
Tudor (IPR002999) - T[132-191] 3.1E-18 |
| ProSiteProfiles |
Tudor (IPR002999) - T[133-193] 20.093 |
| Pfam |
Sec2_N (IPR009449) - T[363-430] 4.8E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SND1_HUMAN | 51.438 % | 318 | 8.78E-99 |
| RAB3I_HUMAN | 53.061 % | 100 | 1.18E-22 |
| R3GEF_HUMAN | 57.732 % | 102 | 1.84E-23 |