Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C10.507.v1...'
  2. EST 'FK176618.1'
  3. Transcript 'NCBI:KH.XM_018812973...'
  4. Transcript 'Phfumi.CG.MTP2014.S4...'
  5. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S213.g05486.01.t

Possible name(s)

RAB3IL1; RAB3IP; SND1

Location

S213 [22,627 / 31,596]

Sequences

Amino acid sequence

Length: 528

>Phmamm.CG.MTP2014.S213.g05486.01.p
MVEVETIDRAGNFIGWLFVDGVNMSQMLLENGLSRLHFTAERSSYYKSLLTAEQTAKEKG
LNMWENYEEPKQEEKVEEPTERKANYKNIFVTEVTSQLHLYCQHVDNGTQLDLLTEKMRS
FLISDPPLAGAYKPRRGEFCVAKFGEDGQWYRARVEKVEQHNDKVHVHYIDFGNKEVVPM
NRVSSLPAEYNTHILLPQAHEYALALIRVPEDADSAADAFRALCSMVGNSQFQLNVEYKD
GGSDFVTLTSADGETDVGRSLVSEGFCTVAKRGEKRLQKMLSEYYGEQEKAKKQHVRLYK
VVTLRAIGLDYYEMENEVEPNPKSILTLEKDKVSVENGVNSNGVDLFCATQMQLELDKLR
RELRDKNAECQRLQDSHIKVEAEIEDLTASLFEEANKMVYDANVKRHRAEKQLAEAKGNI
DALQTEVDALKSLVLTSTPSNPNRLSHPQLIEKKENKLMYTILLSWQPTPFNVQSDFFLN
LQIDALQTEVDALKSLVLTSTPSNPNRLSHPQLIEKKENKLKCNKSNE

Nucleotide sequence

Length: 1,587

>Phmamm.CG.MTP2014.S213.g05486.01.t
ATGGTTGAAGTTGAAACGATTGACCGAGCCGGCAACTTTATTGGTTGGCTGTTTGTGGAT
GGAGTGAATATGTCGCAAATGCTGTTGGAGAACGGACTGTCGCGTCTTCACTTCACGGCT
GAACGCAGCAGCTACTACAAGTCTTTACTTACAGCCGAACAAACTGCCAAAGAAAAGGGC
TTAAATATGTGGGAAAATTACGAAGAGCCAAAGCAGGAAGAAAAAGTGGAAGAACCAACA
GAGAGAAAAGCAAACTACAAGAATATATTTGTCACCGAAGTAACCTCACAATTACATCTC
TACTGCCAGCATGTGGACAACGGGACTCAACTTGATCTTCTAACTGAGAAGATGCGTAGT
TTTCTGATTTCGGATCCTCCTCTGGCGGGCGCCTACAAGCCTCGGCGTGGTGAATTCTGT
GTAGCGAAGTTTGGTGAAGACGGACAGTGGTACAGGGCACGGGTGGAGAAAGTCGAACAA
CACAACGACAAAGTTCACGTTCATTACATCGACTTTGGCAACAAAGAAGTGGTGCCGATG
AATCGAGTGAGTTCACTCCCTGCTGAGTATAACACTCACATTTTACTCCCTCAAGCTCAC
GAGTACGCACTGGCATTGATCCGAGTTCCTGAAGATGCTGATTCAGCTGCTGATGCATTC
CGGGCTCTCTGCTCAATGGTGGGAAATTCTCAGTTCCAATTAAACGTCGAATACAAAGAT
GGAGGAAGCGATTTTGTGACACTCACTAGTGCTGATGGTGAAACGGACGTGGGACGTTCC
TTGGTCAGCGAAGGATTCTGTACTGTGGCGAAAAGAGGCGAAAAACGTCTTCAGAAGATG
CTGAGCGAATATTACGGCGAGCAGGAGAAGGCCAAGAAACAACACGTTAGGTTGTACAAA
GTTGTAACACTTAGGGCCATTGGCTTGGATTATTACGAAATGGAAAATGAAGTTGAACCC
AATCCAAAATCCATTTTAACTTTGGAAAAGGACAAAGTTTCGGTCGAAAATGGAGTGAAT
TCAAACGGTGTTGATCTGTTTTGTGCCACTCAAATGCAGTTAGAATTGGACAAACTTCGA
AGGGAATTACGGGACAAAAATGCAGAGTGTCAACGTCTTCAAGACAGTCATATCAAGGTG
GAAGCTGAGATTGAAGATTTGACTGCAAGTTTATTTGAAGAGGCCAACAAAATGGTTTAT
GATGCAAATGTGAAGCGACACAGAGCGGAAAAACAGTTGGCTGAAGCAAAAGGAAATATT
GACGCATTGCAAACAGAGGTTGATGCTCTTAAGTCTCTTGTCCTTACGTCAACACCGAGC
AATCCAAACAGATTGTCCCACCCACAACTTATTGAGAAGAAGGAAAATAAACTAATGTAT
ACCATTCTTCTGTCATGGCAGCCAACACCATTCAATGTTCAATCTGATTTTTTTTTAAAT
TTGCAGATTGACGCATTGCAAACAGAGGTTGATGCTCTTAAGTCTCTTGTCCTTACGTCA
ACACCGAGCAATCCAAACAGATTGTCCCACCCACAACTTATTGAGAAGAAGGAAAATAAA
CTAAAATGCAACAAGTCAAATGAATAG

InterProScan

Gene3D
SNase_OB-fold_sf (IPR035437) - T[1-64] 2.7E-19 - T[82-284] 4.0E-71
ProSiteProfiles
Staphylococal_nuclease_OB-fold (IPR016071) - T[1-66] 16.693
Pfam
Staphylococal_nuclease_OB-fold (IPR016071) - T[3-66] 3.5E-9
Pfam
Tudor (IPR002999) - T[82-205] 1.6E-28
SMART
Tudor (IPR002999) - T[132-191] 3.1E-18
ProSiteProfiles
Tudor (IPR002999) - T[133-193] 20.093
Pfam
Sec2_N (IPR009449) - T[363-430] 4.8E-12

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SND1_HUMAN 51.438 % 318 8.78E-99
RAB3I_HUMAN 53.061 % 100 1.18E-22
R3GEF_HUMAN 57.732 % 102 1.84E-23