- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S214.g05510.01.t
Possible name(s)
LRP5; LRP6
Gene model
Location
S214 [95,970 / 107,855]
Amino acid sequence
Length: 882
>Phmamm.CG.MTP2014.S214.g05510.01.p
MGHGIENIAYDWRNRNLYLTDSSMKWVLVADNQFQYYAPIHKADPDPAYGLALHSTKRFL
FFSTYKLQGSKIIRTDLAGKNATTLFAYPEVHDVTGMTVDYADEKLYWTDFTGYGSLVMS
SNFDGTNKTQKYYSGSSIYWGIASFNSILYVTDVHRRIDNTGALYYHLWWIPKGRNQKGR
LNVGNYKLTGKPRGVTVMSRQTEQSPFDPVLVTGSCQASPECAHICLPRLNATRECICSI
GYTKQGDTGCVTNSVGTRYMLVSDAGQGKIFRVSLDNSSSNYSVFPMAQASKVTFMTNDG
GAGSFVFWSDKQKQKIFKSTINGATARTLVDKVHARFLAFEPLDQNLFYIDDDTQYIAFA
DAINGYVTTIMKPDRAQRNKTSIRQLTLDLQMKKVYWTDTRSTNDQGQLWRMNYDGSQKE
IVFDNLNWPHGITIDQKNRILYFTESKRSQIYGISLALLANVTGTIPTNRTFYNLKDGKR
KNGIVTEIQVINDLIYFNDRTRNYMEVIDPSAANPGASPFGPRDFYRIRSMVYYDTSYFI
QYINKLGRPCALKGCNSNCVALTRGTSKCLCQDGFNLVTSNLCTNDGTQRPDNPPSYGVT
CPTSKIRVLPPCSNSTPFSWATPAWTDDFTATMNLTLTSPSITSPATLGPGFHEFSYTAT
DHSGNVGHCTFDFTVTQTQCRARQGLGTNIIETATICGDNGPEYNITCASANQLLQFGQD
TRSYMTNRCFSSGEWMYPNLNGLQCVDAPSTTTIIIATTTPRPTTTAAPPATTTTAAAAR
TTTKKGPMKPTGKASTTSGKATTTATLAAKLTKGYAMSSGAIAAIVILVIVFVAVVAVVA
VQYVRNGKRGVGMIIPVFWKPKEDTINLQNDTDDGGNHYSVL
Nucleotide sequence
Length: 2,649
>Phmamm.CG.MTP2014.S214.g05510.01.t
ATGGGCCACGGAATCGAGAATATAGCTTATGACTGGAGGAACAGGAACCTTTATCTCACC
GATTCGTCGATGAAATGGGTTCTGGTGGCTGACAACCAGTTTCAATATTACGCTCCCATC
CATAAAGCCGACCCTGACCCAGCCTATGGACTTGCACTGCACTCTACAAAGAGGTTTCTG
TTTTTCTCCACGTACAAGTTGCAAGGGTCAAAGATTATCAGGACGGATTTGGCGGGAAAA
AACGCGACCACATTGTTCGCGTATCCGGAAGTACATGACGTCACAGGCATGACCGTTGAT
TACGCCGACGAAAAATTGTATTGGACCGATTTCACGGGTTATGGAAGTTTAGTGATGAGT
AGCAACTTTGACGGAACCAACAAGACGCAGAAATATTACAGCGGTTCATCTATATATTGG
GGTATCGCCTCCTTCAATAGCATTCTTTATGTGACCGACGTCCACCGTCGTATCGACAAC
ACAGGGGCGCTCTACTACCATCTGTGGTGGATTCCCAAAGGCAGGAACCAGAAGGGAAGG
TTGAATGTGGGAAACTACAAACTGACGGGGAAACCCCGCGGGGTGACTGTGATGTCACGA
CAGACAGAACAATCGCCGTTTGATCCAGTTTTGGTGACCGGTTCGTGCCAAGCCTCACCA
GAATGCGCTCACATCTGCCTTCCACGGCTCAACGCAACAAGGGAATGCATTTGCTCAATC
GGTTACACCAAGCAAGGAGACACAGGCTGCGTCACAAATTCTGTCGGAACCCGTTACATG
TTGGTCAGCGATGCAGGACAGGGAAAAATTTTCCGAGTTTCACTCGATAACTCGTCCTCA
AACTACTCCGTGTTTCCAATGGCGCAAGCATCTAAGGTAACCTTCATGACAAACGACGGT
GGAGCGGGAAGTTTTGTTTTCTGGTCAGACAAACAAAAACAGAAAATATTCAAATCCACA
ATAAACGGAGCCACTGCACGCACACTGGTCGACAAAGTGCACGCTCGATTTTTGGCGTTC
GAGCCCTTGGACCAGAATCTGTTCTACATTGATGACGACACACAATACATCGCGTTCGCT
GACGCAATCAACGGTTACGTCACCACAATAATGAAACCGGATCGCGCGCAAAGAAACAAA
ACCAGCATTCGACAATTGACACTCGACTTGCAAATGAAGAAAGTTTATTGGACTGATACG
CGAAGTACAAACGACCAGGGTCAGTTGTGGAGAATGAATTACGACGGATCGCAGAAAGAA
ATTGTGTTTGACAACCTCAACTGGCCGCATGGAATAACCATTGACCAAAAAAATCGCATC
CTCTACTTCACCGAATCAAAGAGATCTCAGATATACGGCATCTCTCTGGCCTTACTCGCC
AACGTAACAGGGACAATCCCCACAAATAGAACATTTTACAACCTGAAGGATGGCAAGCGA
AAGAACGGAATTGTAACCGAAATCCAAGTAATCAACGATCTGATTTACTTCAACGACCGA
ACGAGGAACTACATGGAGGTGATTGACCCCAGTGCTGCGAACCCCGGTGCTTCCCCTTTC
GGTCCCAGGGACTTTTATAGGATCCGTAGCATGGTGTATTACGACACCAGTTACTTCATT
CAGTACATAAACAAACTTGGACGACCGTGTGCACTGAAGGGTTGTAACTCAAACTGCGTG
GCTTTAACGCGCGGCACTTCGAAGTGTTTGTGCCAGGACGGATTTAACCTTGTGACGTCC
AATCTCTGCACCAACGATGGAACGCAAAGACCAGACAACCCTCCATCGTACGGGGTGACC
TGTCCAACCAGCAAGATAAGAGTCCTGCCTCCCTGCTCAAACTCAACACCCTTCTCATGG
GCTACTCCTGCATGGACAGATGACTTTACAGCAACAATGAACCTGACGTTGACGTCACCA
TCAATTACGTCACCAGCCACGTTGGGACCTGGGTTCCACGAGTTTAGTTACACCGCCACT
GACCATTCGGGAAATGTTGGACACTGCACGTTTGACTTCACAGTGACACAAACTCAATGT
CGGGCCCGGCAAGGACTCGGAACGAATATAATCGAAACAGCAACAATTTGTGGTGACAAT
GGACCAGAGTATAACATAACCTGTGCATCAGCAAACCAACTGCTTCAATTCGGACAAGAC
ACAAGGTCTTACATGACCAACCGGTGTTTCAGCTCAGGAGAATGGATGTATCCCAACCTT
AATGGCCTTCAGTGCGTCGATGCACCCAGTACAACAACAATCATAATAGCAACAACAACT
CCTAGACCTACAACAACAGCTGCTCCGCCAGCAACAACAACAACAGCAGCAGCTGCACGT
ACAACAACAAAGAAAGGACCTATGAAGCCTACAGGAAAAGCATCAACAACCTCAGGAAAG
GCAACAACCACTGCAACACTGGCTGCGAAACTAACTAAAGGTTATGCAATGAGTTCTGGA
GCTATTGCGGCAATTGTAATCCTTGTTATTGTGTTTGTGGCTGTTGTGGCAGTGGTTGCC
GTGCAATATGTCAGAAATGGTAAGAGAGGAGTGGGAATGATAATCCCTGTTTTCTGGAAA
CCAAAAGAAGACACAATTAATCTTCAAAACGACACAGATGACGGCGGCAACCATTACTCT
GTGCTTTAA
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[2-248] 2.9E-34 - T[249-589] 7.1E-38 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[38-82] 8.1 - T[83-128] 4.6E-5 - T[327-367] 45.0 - T[368-419] 1.3 - T[421-461] 11.0 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[58-103] 6.35 - T[104-128] 7.0 - T[304-330] 7.859 - T[393-438] 11.943 - T[855-882] 4.61 |
| SMART |
EGF-like_dom (IPR000742) - T[215-251] 12.0 - T[549-584] 15.0 |
| Pfam |
SGL (IPR013658) - T[256-479] 2.3E-6 |
| ProSiteProfiles |
HYR_dom (IPR003410) - T[591-677] 15.895 |
| Pfam |
HYR_dom (IPR003410) - T[594-675] 6.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 23.794 % | 96.7 | 3.28E-20 |
| LRP4_HUMAN | 22.321 % | 99 | 5.73E-21 |
| LRP5_HUMAN | 23.038 % | 102 | 6.85E-22 |