- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'Moocul.CG.ELv1_2.S46...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S214.g05511.01.t
Possible name(s)
LRP4; LRP5; LRP6
Gene model
Location
S214 [118,603 / 133,695]
Amino acid sequence
Length: 1,037
>Phmamm.CG.MTP2014.S214.g05511.01.p
MNFRIVLVCLVFILYFFDEISSQQELNNQEECIDGPSMWYTGRRNVTASGIACQRWDSNF
PHAPKQTPSDGSHHNYCRNPDGDLKGTWCYTMDPTKRWEYCKIKKCPDDSVVIWTNHDSK
NGGAHILSVKADPEIVKLQTDTVGIFNVSVLVASNQTKTEFWAVTADYNRQMIFFTDYMS
EYIGVRYMDLGITAQFLEGMAHGIENMAYDWLTGNLYWTDSEFKWVMAVDRTFSFYTPVY
RTKLDPPYAIALHAKQRKLFFSIYNSAGAVIVTTDLAGKGERILFASPEVYDVTGLTIDY
TDDRLYWTDFTGYGGKVVSSRLDGTNKTVHHGRSGAIYWGISAYLDYLYVTDVHARYSPA
GDKHYSVWVINKLPKVESVFRYTLEGKPRGISILSKNEDRSFDDVSAEGECLNQPACDHI
CLPRINATRECACTLGYTKVGDTRCVTNVVQDNFLLLADAGQGKVFQIPFNITSANQYSV
IPLRKTKKVATIAIDPHTKNIYWSDKRVETIKKAGLDGSRTYPLLKQHAVSMAVDHRDGN
VFFADEESQTISVTTSSGTHTRVLMQPDNFNETDIKMLTLDPKNNALYWTDAGSGIGNGS
VWRMRMDGSRKEMVYNKLHSPQAITIDYKRNSLFIGEAKTGMVYEKPLDELKRIQNTSHL
NAKQFDLSGHIRRLTFYIADIKVHENTLFFVDGKTNKIEQIDLTSGPASLTTYGPSEFYR
ITSLALFSTSYYDTYLRPIPNPCATQNHPCQHICIPVSNTTKRCLCEGGSVQLGSACYKT
ANSGKAPRYKEGTCPIDKTYSLLPCFSEAEVTWTDPVWTDDKTDASALTLTRPQWKSPAN
FSVGTYVFSYTATDSDKNVARCTFNVYVKATSCGDPPLMPPSLMINGRLPCNYNFGAEYD
VKCVEPNTKIVFQGSSGDDVTNVCTRSGNWSIPDFKSARCRPKPTTAPGTATTTTTATTA
NTEKEQPHTKKIHTISPTLSDSNTKGVGGIVAPQSTGLKPGTVAAIVVMAILLVIIIAAV
VIMTMRRRGSPWLQKIT
Nucleotide sequence
Length: 3,217
>Phmamm.CG.MTP2014.S214.g05511.01.t
GCGGCAGCGAAGGTGACAATTAACAACATTCCACAAGTGAAAAGCACCAATCAGCGACCG
CTAACATCCTCTCGCATAACGACAACCCTCACACTGACGAGAAACCATGAATTTCCGGAT
AGTGTTGGTTTGTTTAGTTTTTATTTTATATTTTTTCGACGAAATTTCATCACAACAAGA
ATTGAACAACCAAGAAGAATGTATTGACGGACCTAGCATGTGGTACACCGGTAGGAGGAA
CGTTACAGCATCAGGTATCGCGTGTCAAAGGTGGGACAGCAATTTTCCTCACGCTCCCAA
GCAAACACCAAGTGATGGAAGTCACCATAACTATTGCAGAAATCCTGACGGAGATTTGAA
AGGGACGTGGTGCTACACAATGGATCCTACGAAACGATGGGAGTATTGCAAAATTAAGAA
ATGCCCCGACGACTCCGTAGTGATTTGGACGAACCACGATTCGAAGAACGGGGGCGCGCA
CATTCTGTCGGTGAAGGCTGATCCCGAAATCGTGAAGCTTCAAACCGACACAGTTGGAAT
CTTCAACGTTTCCGTGTTGGTCGCATCGAATCAAACAAAAACCGAATTCTGGGCGGTTAC
AGCCGACTACAATCGACAAATGATATTCTTCACAGATTATATGTCGGAATATATCGGTGT
TCGCTACATGGACCTCGGTATCACCGCTCAGTTTCTGGAAGGCATGGCACACGGCATTGA
GAACATGGCATATGACTGGCTGACCGGTAACCTGTATTGGACTGACTCTGAGTTTAAGTG
GGTGATGGCTGTCGACAGAACCTTCAGCTTCTACACACCAGTATATCGCACCAAACTAGA
CCCACCATACGCTATCGCACTCCACGCCAAGCAAAGGAAACTCTTCTTCTCAATCTACAA
CTCCGCTGGCGCTGTAATTGTCACAACCGATCTCGCGGGAAAAGGAGAGAGAATTCTATT
CGCGAGTCCAGAGGTTTATGACGTCACAGGCCTTACAATCGACTACACCGACGACAGATT
GTACTGGACGGATTTTACCGGGTATGGAGGCAAAGTTGTGAGCAGTAGGTTGGACGGAAC
CAACAAAACTGTTCATCACGGCAGGAGTGGCGCCATCTACTGGGGAATTAGCGCATATTT
GGACTACTTGTACGTGACAGACGTTCACGCTCGTTACAGCCCTGCAGGAGACAAACATTA
CTCGGTGTGGGTGATCAACAAACTGCCCAAAGTTGAAAGCGTGTTCAGATACACACTGGA
GGGCAAACCACGTGGTATTTCGATCCTCAGTAAAAATGAGGACCGCTCATTCGATGACGT
TTCAGCAGAAGGCGAATGTCTGAACCAACCCGCATGCGACCATATCTGCTTGCCTCGCAT
CAACGCTACAAGAGAATGCGCTTGTACACTCGGATACACCAAAGTGGGCGACACCAGATG
CGTCACAAATGTTGTACAGGATAACTTCCTTCTTCTCGCCGACGCCGGGCAAGGAAAGGT
TTTCCAAATCCCCTTCAACATCACAAGCGCCAACCAGTACAGCGTCATACCGCTACGCAA
AACAAAGAAGGTAGCGACGATAGCGATTGACCCTCACACTAAAAACATCTACTGGTCAGA
CAAACGTGTCGAAACTATCAAGAAAGCGGGGCTGGACGGGAGCAGGACATATCCACTCCT
CAAACAACACGCTGTGAGTATGGCGGTCGACCACAGAGATGGCAACGTGTTCTTTGCAGA
CGAAGAGAGTCAGACTATCTCAGTTACAACGAGCAGTGGAACGCACACTAGAGTCCTCAT
GCAACCTGACAACTTTAATGAAACCGACATCAAGATGTTAACGCTCGATCCAAAGAACAA
TGCTCTGTACTGGACGGACGCTGGGTCTGGGATCGGAAACGGAAGTGTTTGGCGAATGAG
AATGGACGGAAGTAGGAAGGAAATGGTTTACAACAAGCTTCATTCACCGCAAGCTATCAC
TATCGACTATAAGCGCAACAGTCTGTTCATTGGAGAAGCGAAAACCGGGATGGTGTACGA
GAAGCCTTTGGACGAGCTCAAAAGGATTCAGAACACATCCCACCTGAACGCGAAACAATT
CGACCTTTCAGGCCACATCAGAAGACTGACCTTCTACATTGCTGACATCAAAGTGCACGA
GAACACATTGTTCTTCGTCGACGGGAAGACAAACAAAATCGAACAAATCGACCTCACATC
CGGACCAGCCTCGCTCACAACATACGGACCTTCAGAGTTTTACCGAATTACTTCTCTCGC
TCTGTTCAGCACTTCCTACTACGACACATATCTGCGTCCAATCCCGAACCCATGCGCTAC
ACAGAACCACCCATGTCAGCATATTTGCATCCCTGTGTCGAACACCACCAAGCGATGTTT
GTGTGAAGGTGGGAGTGTGCAACTGGGAAGCGCTTGTTACAAGACTGCTAATTCAGGAAA
AGCGCCGCGTTACAAGGAAGGAACTTGTCCCATTGATAAAACTTATTCCCTCCTGCCATG
CTTCAGTGAAGCAGAAGTCACGTGGACAGACCCAGTGTGGACTGACGATAAAACTGACGC
GTCTGCTTTGACCTTGACTCGACCTCAGTGGAAATCTCCCGCCAATTTTTCGGTTGGAAC
TTACGTGTTCTCATACACTGCCACGGATTCAGACAAAAACGTCGCCAGGTGTACTTTTAA
CGTCTATGTCAAAGCGACCTCATGTGGTGACCCACCACTGATGCCTCCCTCACTGATGAT
CAACGGTCGTTTGCCTTGTAACTACAACTTCGGGGCAGAGTATGACGTCAAATGTGTGGA
GCCGAACACAAAAATCGTATTCCAGGGCTCGAGCGGCGATGACGTCACAAACGTTTGCAC
GAGAAGTGGAAACTGGTCGATCCCTGACTTTAAATCCGCTAGATGCCGCCCTAAACCCAC
CACCGCACCGGGTACAGCCACCACAACCACTACAGCAACAACAGCCAACACAGAAAAAGA
ACAACCACACACGAAAAAAATCCACACAATTTCACCGACGCTAAGTGATTCGAACACAAA
GGGAGTGGGTGGCATTGTTGCGCCACAAAGCACCGGACTGAAACCTGGGACAGTTGCTGC
GATCGTTGTCATGGCAATCCTGCTCGTCATCATCATCGCCGCTGTCGTTATCATGACAAT
GCGCCGACGCGGGTCGCCATGGTTACAGAAGATCACC
| Gene3D |
Kringle_sf (IPR038178) - T[15-114] 1.2E-30 |
| SUPERFAMILY |
Kringle-like (IPR013806) - T[24-112] 1.84E-29 |
| CDD |
Kringle (IPR000001) - T[30-107] 9.18286E-34 |
| SMART |
Kringle (IPR000001) - T[30-108] 4.5E-30 |
| ProSiteProfiles |
Kringle (IPR000001) - T[31-106] 22.136 |
| Pfam |
Kringle (IPR000001) - T[32-106] 8.9E-20 |
| ProSitePatterns |
Kringle_CS (IPR018056) - T[76-89] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[115-444] 2.0E-46 - T[445-782] 4.5E-53 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[149-193] 95.0 - T[194-234] 2.1 - T[237-281] 51.0 - T[282-327] 5.0E-5 - T[479-521] 7.1E-5 - T[522-561] 2.8 - T[562-611] 0.4 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[171-213] 5.399 - T[214-256] 8.439 - T[257-302] 6.026 - T[303-329] 7.836 - T[499-527] 8.833 - T[539-584] 6.722 - T[585-630] 11.711 - T[686-730] 5.121 |
| SMART |
EGF-like_dom (IPR000742) - T[410-446] 0.07 - T[742-778] 23.0 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[410-779] 3.3E-5 |
| ProSiteProfiles |
HYR_dom (IPR003410) - T[782-870] 15.271 |
| Pfam |
HYR_dom (IPR003410) - T[794-868] 4.2E-7 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[871-942] 7.94 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 24.247 % | 152 | 2.69E-37 |
| LRP6_HUMAN | 24.012 % | 144 | 1.21E-34 |
| LRP5_HUMAN | 23.124 % | 145 | 3.02E-35 |