- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S215.g05529.01.t
Possible name(s)
APBA1; APBA2
Gene model
Location
S215 [171,899 / 174,068]
Amino acid sequence
Length: 722
>Phmamm.CG.MTP2014.S215.g05529.01.p
MDETDNNTNINEIENDQTTTETVNINETEEAINNNLNIVQQDLSELPESSIDDLSSCSPS
NPGDEAFPEDSAQSSVELTEEDNLHGIQPEPVLNVQQQEELCVENEPKLITESIEVDENG
LQEMLIVNGHAETEETELKLSDASTSVQKFSQGEKRFNPFDKVSTEENNDLWKYQDKSLD
EIERFSESFSPKGSLPSSPEKQVHKFEENLNPVVDDIWVQQPTVMVEQHHQQFELMPHEQ
KQQKPITDFSSSVEDVEQAIRDVQITPSSSNIPVDDPWVKIAPTPSTPVESKHTMPTTAI
VSDPRPPRNDIKPVEISPHNVPQEHVSQELPPEQTYVRPMFNVAGPCEPEDLIEGIIFTA
NYLGSTQLQSERNPGKNARMLQAQEAVSRIKAPDGESQPSVEVDLFISTDKVKILNAETQ
ETMMDHTLRSISYIADIGKLLVIMARRKVAKSDDSTEPEMLREPKQQKSNRIICHVFSSQ
DAHLMAQAIGQAFNVAYQQFLTTNGIEPQTLTRDDYNELLDMQEMYHDDLVHYSKQENVK
DVWVEKKKGEAMGIVIVESGWGSIVPTVILANMQHGSPVERCGKLSIGDQIMTVNGTSLV
GLPLTTCQSIIKGLRSQSLAHLHIISCPPVVTVLIKRPDLKYQLGFSVQDGIICSLMRGG
IAERGGVRVGHRIIEINGQSVVATAHDKIVQQLVSSLGEIQMKTMPATMYRLLTGQEQPI
YI
Nucleotide sequence
Length: 2,169
>Phmamm.CG.MTP2014.S215.g05529.01.t
ATGGATGAAACAGACAATAACACAAATATAAATGAAATCGAAAATGATCAAACAACTACC
GAAACTGTAAACATCAATGAAACAGAAGAAGCTATAAACAACAATCTCAATATTGTACAA
CAAGACCTAAGTGAACTTCCTGAATCAAGTATTGATGATTTATCATCATGCTCTCCATCG
AATCCTGGCGACGAAGCATTTCCGGAAGATTCTGCTCAATCAAGTGTTGAACTTACAGAG
GAAGACAATTTACATGGAATACAACCTGAACCTGTTCTAAATGTTCAACAACAAGAGGAA
CTTTGTGTAGAAAATGAACCTAAATTAATTACAGAATCTATAGAGGTTGATGAGAATGGT
TTACAAGAAATGCTGATAGTGAATGGACACGCTGAAACTGAAGAAACAGAATTAAAACTG
TCAGATGCATCAACATCAGTACAGAAATTTTCGCAAGGGGAAAAGCGTTTTAACCCATTT
GACAAAGTGTCGACAGAAGAGAACAATGATTTGTGGAAATATCAAGATAAAAGTCTTGAT
GAGATTGAGCGTTTTTCGGAGTCGTTTAGTCCAAAAGGCAGCCTCCCAAGTTCACCGGAA
AAACAAGTTCATAAATTTGAAGAAAATTTAAACCCTGTGGTTGATGATATTTGGGTACAA
CAACCAACAGTAATGGTTGAACAACATCATCAACAGTTTGAACTTATGCCACATGAGCAA
AAGCAACAGAAGCCGATAACTGATTTTAGTTCCAGTGTAGAAGATGTTGAACAAGCAATA
AGAGACGTTCAAATAACCCCATCATCTTCAAATATTCCCGTTGATGACCCATGGGTAAAA
ATTGCCCCTACACCCAGTACCCCTGTTGAATCAAAACATACTATGCCCACCACTGCTATT
GTTTCTGACCCCAGGCCGCCAAGAAATGACATAAAACCTGTAGAAATTTCACCACATAAT
GTGCCCCAGGAGCATGTTTCACAGGAATTACCGCCAGAACAGACCTATGTTAGACCGATG
TTTAATGTTGCTGGGCCGTGTGAGCCTGAAGATTTGATCGAGGGAATTATTTTTACTGCC
AACTATCTAGGTTCCACCCAACTTCAGTCTGAACGCAACCCTGGCAAAAACGCACGAATG
CTGCAGGCACAAGAGGCTGTGAGTCGGATAAAAGCACCTGACGGGGAGTCGCAACCAAGT
GTTGAAGTTGATTTGTTTATTTCAACTGACAAAGTAAAGATTTTAAATGCTGAAACACAA
GAAACAATGATGGACCATACACTCCGATCTATATCCTACATAGCTGACATTGGCAAGTTG
CTGGTAATTATGGCACGGCGGAAAGTTGCAAAATCCGATGATTCAACGGAGCCAGAAATG
CTGCGCGAACCGAAACAGCAAAAATCAAACCGGATTATTTGTCATGTATTTTCCTCCCAA
GACGCACATTTAATGGCACAAGCAATAGGACAAGCATTTAATGTTGCATATCAACAGTTT
TTAACTACAAACGGAATTGAGCCGCAAACTTTAACAAGAGACGACTACAATGAACTACTT
GATATGCAAGAGATGTACCATGATGATTTAGTGCATTACTCCAAACAGGAAAATGTTAAA
GACGTCTGGGTTGAGAAGAAAAAGGGTGAAGCCATGGGAATTGTTATTGTTGAATCAGGC
TGGGGCTCGATTGTGCCCACTGTAATTTTAGCTAATATGCAACATGGCTCACCAGTCGAA
AGATGTGGAAAACTAAGCATTGGAGATCAAATAATGACTGTTAATGGTACCAGCTTAGTT
GGACTGCCACTCACTACCTGTCAAAGCATTATAAAGGGTCTGCGATCACAAAGCCTTGCA
CATTTGCATATCATATCATGTCCACCTGTTGTAACGGTTTTAATCAAGCGGCCAGACCTT
AAGTACCAGCTTGGATTTTCCGTGCAAGATGGAATTATTTGCAGTTTAATGCGAGGAGGC
ATTGCTGAGCGTGGAGGAGTTAGGGTTGGTCATCGTATCATTGAGATTAATGGACAAAGC
GTTGTGGCAACTGCCCATGACAAGATTGTGCAGCAACTTGTCTCATCGCTAGGCGAAATC
CAGATGAAAACGATGCCAGCTACCATGTATCGACTCTTGACTGGCCAAGAACAGCCAATC
TACATTTAA
| Gene3D |
PH-like_dom_sf (IPR011993) - T[349-508] 1.6E-64 |
| SMART |
PTB/PI_dom (IPR006020) - T[353-506] 1.3E-23 |
| ProSiteProfiles |
PTB/PI_dom (IPR006020) - T[355-528] 30.553 |
| Pfam |
PTB/PI_dom (IPR006020) - T[358-502] 5.2E-41 |
| SUPERFAMILY |
PDZ_sf (IPR036034) - T[516-639] 4.07E-17 - T[631-714] 1.31E-14 |
| ProSiteProfiles |
PDZ (IPR001478) - T[541-612] 12.747 - T[632-708] 14.978 |
| Pfam |
PDZ (IPR001478) - T[544-619] 5.5E-10 - T[636-703] 2.3E-12 |
| SMART |
PDZ (IPR001478) - T[550-628] 2.3E-8 - T[642-708] 1.4E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| APBA1_HUMAN | 67.581 % | 572 | 0 |
| APBA2_HUMAN | 67.172 % | 554 | 0 |
| APBA3_HUMAN | 50.704 % | 446 | 3.81E-149 |