- Transcript 'Moocci.CG.ELv1_2.S37...' >
- Clone 'cima028k17' >
- Clone 'man30g12' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S216.g05537.01.t
Possible name(s)
ZIC1; ZIC2; ZIC3
Gene model
Location
S216 [23,752 / 25,091]
Amino acid sequence
Length: 362
>Phmamm.CG.MTP2014.S216.g05537.01.p
MMQSTILADRPYAAYDPRSSLSAHGAYLGHQGTMDSQHFAFAPPPTASYYSGYGVFPHLQ
HQFQAQMQHPVYNREPQQPTNCLQEPVTCKWKTPDQNGGHVCGIIFHDLNDLVGHVTRDH
VGGIEQTDHSCYWDDCPRTGKAFKAKYKLVNHLRVHTREKPFVCNFPGCGKMFGRSENLK
IHLRVHTGEKPFPCKFPGCDRRFANSSDRKKHSYMHNTEKLYICKYEDCDRRYTHPSSLR
KHIKMHEANGDVMIASPSSSSSAASIEALSPIPSPQIDNEAVTSSPGIDQDLKAQRNDVI
IPFSTSSPLKTFDHWSAPVSHHSDVYMPVQQQQYAPPTATFQPNFNQFTAENLVNSGFPS
YH
Nucleotide sequence
Length: 1,089
>Phmamm.CG.MTP2014.S216.g05537.01.t
ATGATGCAATCTACAATCTTAGCTGACCGACCTTACGCAGCTTATGATCCACGATCCAGT
TTAAGTGCACACGGTGCGTACTTGGGTCATCAAGGTACCATGGACAGTCAGCATTTCGCT
TTTGCTCCACCGCCAACAGCGTCATATTATTCCGGTTACGGGGTCTTCCCTCATTTGCAG
CACCAGTTTCAAGCGCAGATGCAACACCCGGTTTACAACAGAGAACCACAGCAGCCGACT
AACTGTCTTCAAGAACCTGTCACTTGCAAATGGAAGACACCGGATCAAAACGGCGGCCAC
GTTTGTGGTATCATCTTCCATGACCTCAATGACCTTGTAGGTCACGTGACACGAGATCAC
GTGGGCGGTATTGAGCAGACTGACCATTCCTGCTATTGGGACGATTGTCCGCGTACAGGC
AAGGCTTTCAAGGCCAAGTACAAGTTGGTGAATCATTTGCGCGTTCATACAAGAGAAAAA
CCGTTCGTGTGCAACTTCCCTGGATGTGGAAAAATGTTTGGAAGAAGTGAAAACCTCAAG
ATTCATCTTCGTGTTCATACAGGTGAAAAACCATTTCCCTGCAAATTTCCCGGATGCGAT
AGACGATTCGCAAATAGCTCAGATCGCAAGAAGCACAGCTATATGCATAACACCGAAAAG
CTATACATTTGCAAGTACGAAGACTGTGATCGCAGATACACACACCCAAGCTCGCTTCGA
AAGCACATCAAAATGCACGAAGCAAATGGTGACGTCATGATTGCGTCACCATCATCTTCG
TCATCAGCAGCCTCCATTGAGGCTCTATCTCCGATTCCAAGCCCACAGATCGACAACGAA
GCTGTGACATCATCACCCGGGATTGATCAGGACCTCAAAGCCCAAAGAAATGACGTAATC
ATCCCCTTTTCGACGTCATCGCCATTAAAGACATTTGACCACTGGAGTGCGCCAGTCAGC
CACCACAGCGACGTGTATATGCCTGTCCAACAACAGCAGTACGCACCACCCACTGCCACT
TTTCAACCTAATTTTAACCAGTTTACGGCAGAAAATTTAGTAAATTCCGGTTTTCCTTCG
TATCATTAA
| SMART |
Znf_C2H2_type (IPR013087) - T[100-120] 210.0 - T[129-156] 4.7 - T[162-186] 2.7E-4 - T[192-216] 0.019 - T[222-246] 4.5E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[134-161] 11.967 - T[162-191] 16.311 - T[192-221] 10.533 - T[222-251] 10.762 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[142-198] 3.63E-19 - T[186-242] 1.12E-9 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[162-186] 4.0E-5 - T[222-246] 9.0E-5 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[164-186] . - T[194-216] . - T[224-246] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC2_HUMAN | 57.5 % | 240 | 6.32E-75 |
| ZIC3_HUMAN | 53.394 % | 237 | 2.81E-74 |
| ZIC1_HUMAN | 56.604 % | 236 | 3.93E-74 |