- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S216.g05538.01.t
Possible name(s)
ZIC2; ZIC3; ZIC4
Gene model
Location
S216 [27,000 / 34,403]
Amino acid sequence
Length: 652
>Phmamm.CG.MTP2014.S216.g05538.01.p
MVMTFMVDNAGKRIIIYHKRVCAKLNYTELTIVFVCSDLFAKNYLNDIMMQSSIIADRPY
AAYDPRAAFPAAHSSFLPQQQPHASFELQVAFHGNPTSSYVPGYGASPQIPLHYQHPTSV
PAYNPFPSPTISTLKEPVTCQWKSPNQNGGHVCGVVFHDLNDLVGHVTRDHVGGIEQTDH
TCYWAGCSRAAKAFKAKYKLVNHLRVHTGEKPFVCNFPGCVKTFGRSENLKIHKRTHTGE
KPFPCKFPGCDRRFGNSSDRKKHTYMHNTEKLYTCHICLQKNYLNDIMMQSSIIADRPYA
AYDPRAAFPAAHSSFLPQQQPHASFEPQVAFHANPTSSYLPGYGVFPQIPVHYQHPTSVP
AYNPIPSPTISTLQEPVTCQWKSPNQNGGLVCGVVFHDLNDLVGHVTRDHVGGIEQTDHT
CYWGSCSRTNKAFKAKYKLVNHLRVHTGEKPFVCNFPGCGKTFGRSENLKIHKRTHTGEK
PFPCKFPGCDRRFGNSSDRKKHSYMHNTEKLYTCHYEDCDRSYTHPSSLRKHIRMHESNG
DVISSSGSETSTSTSPHSSCSSPASSQGQAEPAHQPYYLNEIVTSPIGLRQTTTMSVLPT
HNWENEQHDFVTSSSGLQYPTKHATYQENTMLPPQQQPYFDFTSIASGFAHC
Nucleotide sequence
Length: 1,959
>Phmamm.CG.MTP2014.S216.g05538.01.t
ATGGTAATGACCTTCATGGTTGACAATGCCGGAAAACGAATAATTATCTATCACAAAAGA
GTCTGTGCGAAATTGAATTACACTGAACTAACCATTGTTTTCGTTTGTTCAGATTTGTTT
GCAAAAAACTATCTAAACGATATCATGATGCAATCATCAATCATTGCTGATCGTCCGTAC
GCTGCGTACGACCCCCGGGCTGCTTTTCCGGCAGCTCACAGCTCATTTTTACCACAACAG
CAGCCACATGCAAGCTTCGAACTACAGGTCGCCTTCCACGGCAACCCCACATCGTCATAC
GTACCAGGGTATGGGGCATCCCCCCAAATCCCGCTTCATTATCAGCACCCAACGTCGGTT
CCAGCTTACAACCCATTCCCTTCACCAACAATCTCGACACTTAAAGAACCAGTTACATGT
CAATGGAAGTCACCCAACCAAAACGGTGGTCACGTGTGTGGAGTTGTTTTTCATGACCTT
AATGACCTAGTGGGTCACGTGACACGAGATCACGTGGGCGGCATCGAGCAGACCGATCAC
ACGTGCTACTGGGCCGGTTGTTCGCGCGCTGCCAAAGCTTTCAAGGCCAAGTACAAGTTG
GTGAATCATTTACGCGTGCACACTGGTGAAAAACCGTTCGTCTGCAACTTCCCTGGATGC
GTGAAAACCTTTGGAAGAAGTGAGAACTTGAAGATCCACAAAAGAACCCACACCGGTGAA
AAACCATTTCCCTGCAAATTTCCTGGATGTGATAGAAGATTCGGAAACAGCTCGGATCGC
AAAAAGCACACTTATATGCACAACACCGAAAAACTTTACACTTGTCATATTTGTTTGCAA
AAAAACTATCTAAACGATATCATGATGCAATCATCAATCATTGCTGATCGTCCGTACGCT
GCGTACGACCCCCGGGCTGCTTTTCCGGCAGCTCACAGCTCATTCTTACCTCAACAGCAG
CCACATGCAAGCTTTGAACCACAGGTCGCCTTCCACGCCAACCCCACGTCGTCATATTTA
CCAGGGTATGGGGTATTCCCTCAAATCCCAGTTCATTATCAGCACCCAACGTCAGTTCCT
GCTTACAACCCAATCCCTTCACCAACAATTTCGACACTTCAAGAACCGGTTACATGTCAA
TGGAAGTCACCTAACCAAAACGGCGGACTAGTGTGTGGAGTGGTTTTCCATGACCTCAAT
GACCTTGTGGGTCACGTGACACGAGATCACGTGGGCGGCATCGAGCAGACCGACCACACG
TGCTACTGGGGCAGTTGTTCGCGCACTAACAAGGCTTTCAAGGCCAAGTACAAGTTGGTA
AATCATTTACGCGTTCACACTGGTGAAAAACCGTTCGTCTGCAACTTCCCTGGATGCGGA
AAAACCTTTGGAAGAAGTGAGAACTTGAAGATCCACAAAAGAACCCACACCGGTGAAAAA
CCATTTCCCTGCAAATTTCCTGGATGTGATAGAAGATTCGGAAACAGCTCAGACCGCAAG
AAGCACTCTTACATGCATAACACCGAAAAACTTTACACTTGCCATTACGAAGATTGTGAT
CGCAGTTACACACACCCGAGCTCGTTGCGAAAACACATCCGAATGCACGAAAGCAATGGT
GATGTCATTTCAAGCAGTGGCAGCGAAACGTCAACATCTACGTCCCCGCATTCGTCATGC
AGCTCGCCTGCTTCATCCCAGGGCCAGGCCGAACCAGCCCATCAGCCATACTACTTAAAC
GAAATTGTGACGTCACCCATTGGCCTTCGCCAAACTACGACTATGTCAGTTTTGCCTACC
CACAATTGGGAAAATGAACAACACGACTTTGTGACCTCATCGAGCGGTCTTCAATACCCA
ACAAAACATGCAACGTATCAGGAAAATACGATGCTACCACCACAACAACAACCTTATTTC
GATTTCACATCTATCGCATCTGGTTTTGCTCATTGTTGA
| SMART |
Znf_C2H2_type (IPR013087) - T[151-171] 160.0 - T[180-207] 3.4 - T[213-237] 0.0041 - T[243-267] 0.028 - T[391-410] 270.0 - T[419-446] 8.5 - T[452-476] 2.6E-4 - T[482-506] 0.032 - T[512-536] 5.1E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[185-212] 12.03 - T[213-242] 15.313 - T[243-272] 10.325 - T[424-451] 12.321 - T[452-481] 16.623 - T[482-511] 10.305 - T[512-541] 11.51 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[193-248] 4.24E-18 - T[237-273] 5.74E-8 - T[432-488] 1.15E-19 - T[476-532] 6.88E-9 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[213-237] 0.0019 - T[452-476] 5.4E-5 - T[512-536] 1.1E-5 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[215-237] . - T[245-267] . - T[454-476] . - T[484-506] . - T[514-536] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC4_HUMAN | 56.842 % | 224 | 5.92E-68 |
| ZIC2_HUMAN | 56.65 % | 229 | 1.54E-67 |
| ZIC3_HUMAN | 60.541 % | 230 | 1.81E-68 |