- Transcript 'Cisavi.CG.ENS81.R1.6...' >
- Clone 'AHC0AAA178YA05' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S218.g05569.01.t
Possible name(s)
CSDE1
Gene model
Location
S218 [108,066 / 128,245]
Amino acid sequence
Length: 1,166
>Phmamm.CG.MTP2014.S218.g05569.01.p
MKRVPYSWSPNSITPNNMPVNTSLSNLLDAQPFRPQASLMHNFESMYFDFVLKLFVWFMC
TDSNHLLLSEQQKVLVTGGIAALQQHQQEAKERQMINRRSLTRTVSCGVFTQNGNIRPSA
LNQHRALQRSTSFDSNPILNFPPFSNPANAPGSSSPNAVSPASTPGLNNGYRSRETGVIE
KLLVSYGFIKCADREGRLFFHYSQYHGEAQHLHINDEVEFEVSMDTRTGKPVAVQVVQLQ
KGTVVFEVLSEERILGEVTNPAPPLSLVPGQASFNVVPGGTTVVAGHGYKPSEKGEPIVS
RKLGSLSYERMGEYFFLHYSANDLTNPNLILQPGDKVSFNIATEKRTSVMRARKITLVER
APPKRFTGIVTAMKDSFGFIERADVVKEIFFHYSEVSSNVPDLHVGDHVEFSVQERNNKD
VATDIRLLPLGSVQLEQISNELFVGTIEKPLPAKAPNKVVNETTIAGGDATSPNQKESAV
ISINGSPPQQPSLSLAGVLCYVNPQGETCRIRFGEKDRAANCLHTLRQGDKVSFLTITDK
RNGQQRAAGVTLLLDETLNSSNEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCELLDPA
HHIRMSDEVEFTVLLDPVAEKQSRMHATRIKLLPKGSVIFHTVTDAIYCGIVETLPGASP
TAPPKSPNDCLFSPALGPNPGIIVYSVNNNPTDETSDGVARIPFATKDFRDWMDALSLKI
GDKVEFKICEVKRTNAQNAVDLRLIGRRSAPEEQGGKRRTFSSSLSSSGLKLAPLFEEAM
VVNDQDANDQNNYPTHTEVSLPHFALENVPLRKPASRPVTIRAPDSPAHSDHAPSDSDVA
SVETEQIQENGVDVKTEGDMPKVSDAIPDEKEEKVENKNSTDEGRLFGWVSTLKETFGFI
ETIDHSSEIFFHYSEMQSPVDQYKVATPVSYVCGIKEEKAYALHVIKLTDDDIPVKEVIE
TKVVKGKVLKPLKSVNPGQNSYQGLIEFKETNEKDQTSIKTISFSPLSLSDRRDFIQIGD
KVTFQVCTDTNSNMQRAVNVNFGFINYEVKGSDGGSGKLFFHMSEVRDTTQTINAGATVE
FSVIYNQRSGKFSASRVRLADALPKQQRPERLRLRSTCDQTTGPTVQVVRKPKGPTENAI
GFTMTRSVTTDTLTTAGQSSKGPNDA
Nucleotide sequence
Length: 3,501
>Phmamm.CG.MTP2014.S218.g05569.01.t
ATGAAACGGGTGCCGTATTCGTGGTCACCCAACAGTATTACACCAAACAACATGCCGGTA
AACACGTCACTCAGCAACCTTCTTGATGCTCAGCCATTCCGTCCTCAAGCTTCTTTAATG
CACAATTTTGAGTCCATGTATTTTGATTTTGTTCTGAAATTGTTTGTATGGTTTATGTGC
ACAGATTCGAACCATTTGTTGTTATCAGAGCAGCAAAAAGTATTGGTAACTGGTGGAATA
GCGGCCCTGCAACAACATCAACAAGAAGCCAAAGAGAGACAGATGATCAATCGCCGTTCA
CTCACACGCACAGTTAGTTGTGGAGTCTTCACACAGAATGGCAACATTCGACCTTCTGCA
TTAAATCAGCACCGAGCCCTTCAGAGATCCACAAGTTTCGATTCCAATCCTATTCTAAAC
TTTCCCCCTTTCTCCAATCCTGCAAATGCACCTGGGTCCTCATCACCGAATGCTGTATCC
CCTGCCTCAACCCCAGGACTTAACAATGGGTATCGGAGTCGGGAGACTGGAGTCATTGAG
AAACTGCTTGTGTCTTATGGATTCATTAAATGTGCAGACCGTGAAGGTCGTTTGTTTTTC
CACTACAGCCAGTACCATGGTGAAGCACAACACTTACACATAAATGATGAAGTTGAGTTT
GAGGTATCAATGGATACACGCACCGGAAAACCAGTTGCTGTCCAAGTGGTGCAACTTCAA
AAAGGAACAGTCGTTTTCGAAGTATTAAGTGAGGAACGGATTCTGGGAGAAGTTACAAAC
CCTGCTCCTCCTTTGTCCCTGGTTCCAGGACAGGCTTCTTTCAATGTCGTCCCAGGTGGA
ACCACTGTTGTGGCCGGACATGGGTACAAACCAAGCGAGAAGGGCGAGCCAATTGTCTCA
CGAAAACTCGGAAGTCTGTCATATGAAAGAATGGGGGAATATTTCTTCTTACATTATTCA
GCAAATGACCTCACCAACCCAAATCTTATTCTTCAGCCAGGAGATAAAGTCTCCTTCAAT
ATTGCTACTGAAAAAAGGACGAGTGTGATGCGGGCGCGCAAAATCACTCTTGTGGAACGA
GCTCCACCAAAGCGCTTCACTGGGATCGTCACTGCCATGAAGGATTCGTTCGGTTTCATC
GAACGCGCCGACGTAGTTAAAGAGATATTTTTTCACTACAGCGAAGTTTCATCAAATGTC
CCAGATCTTCACGTAGGCGATCACGTGGAATTCAGTGTACAAGAACGAAATAACAAGGAT
GTGGCCACGGACATACGACTTCTGCCGTTGGGTTCAGTGCAACTTGAGCAAATATCAAAC
GAACTATTTGTGGGAACTATTGAAAAGCCACTGCCAGCGAAGGCGCCTAACAAAGTCGTT
AACGAGACTACCATTGCTGGAGGTGACGCCACATCGCCAAATCAAAAGGAGTCTGCAGTG
ATTTCTATTAATGGTTCTCCTCCGCAACAACCATCTCTGTCACTAGCGGGCGTGCTGTGC
TACGTCAATCCACAAGGCGAAACTTGCAGGATTCGATTCGGAGAGAAGGACAGAGCTGCA
AATTGTCTTCACACGTTGAGGCAAGGCGACAAGGTGTCGTTTCTGACAATAACAGACAAG
AGAAACGGCCAGCAGAGGGCAGCAGGCGTCACATTATTGTTGGATGAAACATTGAACAGC
AGCAACGAAAAACGTGAACAGGGAATTGTTGCCGCAGTGAAAGAAGGATTCGGTTTCATT
AAATGCGTTGAAAGAGATTCTCGTCTTTTCTTCCACTGCTGTGAACTGCTCGATCCAGCT
CATCACATTCGTATGTCTGATGAAGTGGAATTCACTGTCCTGCTCGACCCTGTTGCTGAA
AAGCAGAGCAGAATGCACGCAACCCGAATCAAACTTCTTCCCAAGGGTTCGGTCATCTTT
CACACTGTCACTGATGCAATCTACTGCGGAATTGTCGAAACACTTCCAGGGGCTTCACCT
ACCGCTCCACCAAAAAGTCCGAATGACTGCCTGTTTAGTCCAGCCCTGGGACCGAATCCT
GGCATAATCGTGTACTCTGTCAATAACAACCCAACCGACGAAACAAGTGATGGAGTAGCT
CGTATTCCATTCGCCACCAAAGATTTCCGAGATTGGATGGACGCTCTTTCACTCAAAATC
GGAGACAAGGTTGAGTTCAAGATATGCGAAGTGAAGCGCACCAATGCACAGAACGCAGTG
GATCTAAGGTTAATAGGAAGGCGCAGCGCACCGGAGGAGCAGGGAGGAAAGAGGAGGACT
TTCTCCAGCTCTCTCTCCTCCTCTGGACTCAAACTTGCTCCTCTCTTCGAAGAGGCGATG
GTGGTTAATGATCAAGATGCAAATGACCAAAATAATTACCCCACGCACACTGAAGTGAGT
CTACCGCACTTTGCATTGGAGAATGTTCCGTTGAGGAAACCGGCCTCACGACCCGTTACT
ATCAGAGCCCCAGACAGCCCCGCCCACTCCGACCACGCCCCCAGCGACAGTGACGTAGCC
AGTGTTGAAACCGAGCAAATTCAAGAAAACGGTGTTGATGTCAAAACAGAGGGGGATATG
CCAAAAGTTTCTGATGCAATCCCAGACGAGAAAGAAGAGAAGGTTGAAAACAAAAACAGT
ACCGACGAAGGTCGCTTATTCGGCTGGGTGAGCACTTTGAAGGAGACTTTCGGGTTCATC
GAAACTATTGACCATTCGTCGGAAATCTTTTTCCATTATAGCGAGATGCAATCCCCTGTC
GACCAATATAAAGTAGCAACACCAGTGTCCTATGTTTGTGGCATTAAAGAGGAAAAAGCT
TATGCTCTGCACGTTATCAAACTGACTGATGACGACATTCCAGTGAAAGAAGTTATCGAA
ACAAAAGTGGTAAAAGGCAAAGTGCTAAAGCCGCTAAAATCCGTAAACCCGGGCCAAAAC
AGTTACCAGGGGTTAATCGAGTTCAAAGAAACCAACGAGAAAGACCAAACAAGCATTAAG
ACCATCTCATTTAGCCCATTGAGTCTCAGTGACCGAAGAGATTTTATCCAAATCGGCGAT
AAAGTAACATTCCAGGTGTGCACTGATACCAACAGCAACATGCAACGCGCTGTGAATGTT
AACTTTGGATTTATTAACTATGAAGTGAAAGGAAGCGACGGTGGAAGCGGGAAACTTTTC
TTTCACATGTCTGAAGTTCGTGACACAACACAAACTATCAATGCTGGAGCGACTGTTGAA
TTTTCAGTCATCTATAACCAGCGAAGTGGCAAATTCTCAGCCTCTCGGGTAAGATTAGCT
GATGCTCTTCCCAAACAGCAGCGCCCGGAAAGACTAAGACTCCGCAGTACATGCGACCAA
ACAACAGGTCCAACAGTTCAAGTAGTGCGAAAACCAAAAGGCCCGACTGAAAATGCCATA
GGCTTCACCATGACTCGCAGCGTCACTACAGATACACTCACCACCGCCGGGCAATCCTCC
AAAGGACCTAATGATGCGTAA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[170-243] 9.3E-16 - T[363-429] 2.03E-15 - T[557-637] 1.64E-13 - T[885-950] 1.15E-10 - T[1041-1100] 3.67E-9 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[176-238] 3.1E-12 - T[367-426] 1.9E-15 - T[567-614] 2.0E-6 - T[888-947] 2.6E-6 - T[1039-1098] 3.9E-7 |
| SMART |
CSD (IPR011129) - T[176-239] 4.2E-10 - T[367-428] 7.3E-15 - T[567-633] 7.0E-5 - T[887-948] 0.068 - T[1036-1100] 0.15 |
| CDD |
CSP_DNA-bd (IPR002059) - T[186-236] 7.40397E-9 - T[367-427] 2.90298E-12 - T[1042-1099] 5.74147E-7 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[186-205] . - T[377-396] . - T[897-916] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.365 % | 363 | 2.87E-110 |