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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S218.g05569.02.t

Possible name(s)

CSDE1

Gene model

Phmamm.CG.MTP2014.S218.g05569

Location

S218 [122,979 / 127,482]

Sequences

Amino acid sequence

Length: 276

>Phmamm.CG.MTP2014.S218.g05569.02.p
MSKCNLTLFIVQRSTSFDSNPILNFPPFSNPANAPGSSSPNAVSPASTPGLNNGYRSRET
GVIEKLLVSYGFIKCADREGRLFFHYSQYHGEAQHLHINDEVEFEVSMDTRTGKPVAVQV
VQLQKGTVVFEVLSEERILGEVTNPAPPLSLVPGQASFNVVPGGTTVVAGHGYKPSEKGE
PIVSRKLGSLSYERMGEYFFLHYSANDLTNPNLILQPGDKVSFNIATEKRTSVMRARKIT
LVERAPPKRFTGIVTAMKDSFGFIERADVVKEVSGL

Nucleotide sequence

Length: 831

>Phmamm.CG.MTP2014.S218.g05569.02.t
ATGTCGAAATGTAACCTTACACTTTTCATTGTGCAGAGATCCACAAGTTTCGATTCCAAT
CCTATTCTAAACTTTCCCCCTTTCTCCAATCCTGCAAATGCACCTGGGTCCTCATCACCG
AATGCTGTATCCCCTGCCTCAACCCCAGGACTTAACAATGGGTATCGGAGTCGGGAGACT
GGAGTCATTGAGAAACTGCTTGTGTCTTATGGATTCATTAAATGTGCAGACCGTGAAGGT
CGTTTGTTTTTCCACTACAGCCAGTACCATGGTGAAGCACAACACTTACACATAAATGAT
GAAGTTGAGTTTGAGGTATCAATGGATACACGCACCGGAAAACCAGTTGCTGTCCAAGTG
GTGCAACTTCAAAAAGGAACAGTCGTTTTCGAAGTATTAAGTGAGGAACGGATTCTGGGA
GAAGTTACAAACCCTGCTCCTCCTTTGTCCCTGGTTCCAGGACAGGCTTCTTTCAATGTC
GTCCCAGGTGGAACCACTGTTGTGGCCGGACATGGGTACAAACCAAGCGAGAAGGGCGAG
CCAATTGTCTCACGAAAACTCGGAAGTCTGTCATATGAAAGAATGGGGGAATATTTCTTC
TTACATTATTCAGCAAATGACCTCACCAACCCAAATCTTATTCTTCAGCCAGGAGATAAA
GTCTCCTTCAATATTGCTACTGAAAAAAGGACGAGTGTGATGCGGGCGCGCAAAATCACT
CTTGTGGAACGAGCTCCACCAAAGCGCTTCACTGGGATCGTCACTGCCATGAAGGATTCG
TTCGGTTTCATCGAACGCGCCGACGTAGTTAAAGAGGTAAGTGGGCTGTGA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[54-127] 1.05E-16
SMART
CSD (IPR011129) - T[60-123] 4.2E-10
Pfam
CSP_DNA-bd (IPR002059) - T[60-122] 4.1E-13
CDD
CSP_DNA-bd (IPR002059) - T[70-120] 2.99254E-9
ProSitePatterns
Cold-shock_CS (IPR019844) - T[70-89] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CSDE1_HUMAN 42.678 % 171 1.29E-48