- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S21.g00870.01.t
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
S21 [29,007 / 30,310]
Amino acid sequence
Length: 332
>Phmamm.CG.MTP2014.S21.g00870.01.p
EISQAKVIKVDEDFEAQNVSGQEEFIVCVEEGQDLEGVQDEEREMLALADAAATGNPFSE
EVVVQAEPALSVSQSVNTNTLLENLSNLSNPSEQVQIVVEQDPTGEHSIKHELAENSQNL
QNQGDEGQQTSTATVAAPHGVNPSMMSNLLHTAAAVAASQNAAAATVQVIPGQTAGTIQL
VQEQDVQKTQAMMAAGIAPQSVNQSAEDAAKTPPQTTFTYLVTSQGTLIAAHSSDGTELI
SNSSAAAKTRRTQGRRRQSKGSKAVKEEVSENGDDGHGSGVNQLGGMYVNGRPLPEPIRQ
RIVNLSHQGVRPCDISRQLRVSHGCVSKILAR
Nucleotide sequence
Length: 1,188
>Phmamm.CG.MTP2014.S21.g00870.01.t
TGAAATATCACAAGCCAAAGTTATAAAAGTGGATGAGGATTTTGAAGCCCAAAATGTCAG
CGGCCAAGAAGAGTTTATTGTCTGCGTTGAAGAAGGACAAGACCTTGAGGGTGTCCAAGA
TGAAGAAAGGGAGATGTTGGCCTTGGCAGACGCAGCAGCTACAGGAAATCCATTTTCAGA
AGAAGTTGTCGTCCAAGCTGAGCCCGCATTGTCAGTGTCACAATCTGTAAACACAAACAC
ATTGCTTGAAAACTTATCAAACCTCTCGAATCCATCGGAGCAAGTGCAAATTGTTGTTGA
ACAAGATCCCACTGGTGAACACTCAATTAAACATGAACTGGCTGAAAACAGTCAAAATTT
GCAAAACCAGGGTGATGAAGGCCAACAAACAAGCACTGCTACTGTAGCAGCTCCACACGG
TGTAAACCCTTCCATGATGAGCAACCTTCTACACACAGCAGCTGCAGTTGCTGCCTCTCA
AAATGCCGCAGCAGCCACTGTACAAGTTATCCCTGGTCAGACGGCAGGAACGATTCAGCT
TGTTCAGGAACAAGATGTACAGAAAACACAAGCCATGATGGCCGCTGGTATCGCTCCCCA
AAGTGTAAATCAGTCTGCTGAAGATGCTGCGAAGACACCACCACAAACAACATTCACTTA
CTTAGTCACCAGTCAGGGAACGTTGATTGCTGCTCATTCTAGCGATGGCACAGAATTGAT
TTCCAATAGCAGTGCTGCTGCAAAGACTCGTCGTACTCAGGGCAGAAGAAGACAGAGCAA
AGGCTCTAAGGCAGTTAAGGAAGAAGTATCAGAAAATGGTGATGATGGCCATGGCAGCGG
AGTCAACCAATTGGGTGGAATGTATGTCAATGGCCGCCCGCTTCCAGAGCCTATTCGGCA
AAGAATTGTCAACTTATCTCATCAGGGTGTAAGACCTTGTGACATTTCAAGACAGCTAAG
GGTCTCACATGGGTGTGTGAGCAAAATTTTGGCAAGGTAACTTTCGACAGAAACAAACCC
AGTTGCAGTGACTGAGCCAGAAAACTATGAAAATGTGTGAACCTTTCAAAGTCGTTTCAA
CATTTTTTAAATGAGATTTTTCTGGAGCTTTTTTGAAAATTATATTATGTAAGCCTCTCA
CAATAGCATTTATCAAAAATTCATAAAATGTAAAATATAGCACATTCC
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[270-332] 7.0E-30 |
| SMART |
Paired_dom (IPR001523) - T[277-332] 6.2E-6 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[277-332] 29.386 |
| Pfam |
Paired_dom (IPR001523) - T[279-332] 1.3E-26 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[280-332] 2.01E-18 |
| PRINTS |
Paired_dom (IPR001523) - T[281-296] 3.8E-25 - T[299-317] 3.8E-25 - T[319-332] 3.8E-25 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[311-327] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 84.211 % | 108 | 6.41E-27 |
| PAX2_HUMAN | 84.211 % | 108 | 1.23E-26 |
| PAX8_HUMAN | 84.211 % | 108 | 1.75E-26 |