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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S224.g05660.01.t

Possible name(s)

ZFP36; ZFP36L1; ZFP36L2

Location

S224 [41,339 / 43,066]

Sequences

Amino acid sequence

Length: 390

>Phmamm.CG.MTP2014.S224.g05660.01.p
MSSTMVSSNIGFNEFQSDYAAIRSSFHDLQRSAALDKADFASNASFAVGFSNRTALARRH
SSSVFGASVVKPLAATITSTFRDTSGAHVGNGLLETVAEERFRSRAYSEGSNLSCDQQQQ
QQAQTTSRYKTELCRPFEENGRCKYGDKCQFAHGKHELRHMVRHPKYKTELCRTYHTSGL
CMYGPRCHFIHNTDELAPVSRQNSVSGIGLQTHQVSVPVTISNVIQQKRPTNLQLLSQQQ
QRNINQMNNAFPYPTANKVNTSPIGTPPGFFGPAEQPPLLSPVSPISATRTGPVFSFAKA
PMSPMDLQGATKTFGGFDVENRQATPPLTRFDVMQGGHQYMDLSNEDAVFDPPTPPDSDR
ESESGSPQAGGILNNSPQRLPIFRCLSQSE

Nucleotide sequence

Length: 1,173

>Phmamm.CG.MTP2014.S224.g05660.01.t
ATGTCGTCTACTATGGTTTCATCCAACATTGGCTTCAATGAGTTTCAATCAGACTATGCG
GCTATCCGCAGCAGCTTTCATGACTTGCAGAGAAGTGCAGCCCTGGACAAGGCTGACTTT
GCGTCAAACGCTTCCTTTGCTGTTGGATTTTCAAACCGTACGGCACTAGCTCGCCGCCAC
TCTTCGTCGGTCTTTGGCGCATCGGTAGTTAAACCTTTGGCAGCCACGATAACTTCCACA
TTCCGCGATACCAGTGGAGCTCATGTCGGCAATGGATTACTTGAGACTGTAGCTGAGGAG
CGCTTTCGCAGCCGAGCATACAGCGAAGGCTCAAACCTTAGCTGCGACCAGCAACAGCAG
CAGCAAGCACAAACCACCAGTCGCTACAAGACGGAGCTTTGTCGTCCATTCGAAGAAAAC
GGCCGATGCAAGTACGGTGACAAGTGCCAGTTTGCTCACGGCAAGCATGAGCTTAGGCAT
ATGGTCAGGCATCCCAAGTACAAAACCGAACTGTGTCGGACCTACCACACAAGCGGCTTG
TGTATGTACGGTCCACGATGTCATTTCATTCACAATACTGACGAGTTGGCTCCTGTTTCC
CGCCAGAATTCTGTCAGTGGCATTGGTTTGCAAACACATCAGGTCTCGGTTCCAGTTACG
ATTTCGAATGTCATTCAACAGAAGAGACCTACAAACCTACAGCTGCTTTCACAACAACAA
CAGCGCAACATCAATCAAATGAACAACGCCTTTCCATATCCGACGGCCAACAAAGTCAAT
ACTAGCCCGATTGGCACGCCGCCCGGCTTCTTTGGTCCCGCTGAGCAGCCGCCATTGCTG
TCCCCGGTGTCGCCAATATCCGCTACGCGCACAGGCCCGGTGTTCAGCTTCGCTAAAGCG
CCAATGTCGCCGATGGACCTCCAGGGCGCCACCAAGACTTTTGGTGGTTTCGATGTGGAG
AATCGTCAGGCAACACCACCGTTAACAAGGTTTGATGTTATGCAAGGAGGACATCAATAC
ATGGATTTGTCAAATGAGGATGCTGTTTTCGACCCACCAACGCCTCCGGATTCGGATCGC
GAATCTGAATCAGGCTCCCCACAAGCTGGTGGCATTCTAAACAATTCGCCGCAGCGCCTT
CCGATTTTCAGGTGCCTTTCGCAATCGGAATAA

InterProScan

SUPERFAMILY
Znf_CCCH_sf (IPR036855) - T[125-160] 2.49E-10 - T[162-197] 2.49E-10
ProSiteProfiles
Znf_CCCH (IPR000571) - T[128-156] 17.413 - T[166-194] 14.436
SMART
Znf_CCCH (IPR000571) - T[128-155] 1.5E-9 - T[166-193] 2.9E-7
Pfam
Znf_CCCH (IPR000571) - T[129-155] 7.7E-11 - T[167-192] 1.4E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TISB_HUMAN 69.697 % 152 4.92E-43
TISD_HUMAN 55.303 % 144 1.21E-38
TTP_HUMAN 58.763 % 112 3.09E-28