- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Moocci.CG.ELv1_2.S37...' >
- Transcript 'Harore.CG.MTP2014.S5...' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S225.g05680.01.t
Possible name(s)
PCDH1; PCDH17; PCDH18
Gene model
Location
S225 [53,839 / 61,644]
Amino acid sequence
Length: 1,004
>Phmamm.CG.MTP2014.S225.g05680.01.p
VGQNARVTYKMQRNTFFGLNEYEDDTGARRLELVVADELDHERSDTEELTIRATDDGTPI
KSTSALLRVNIIDANDNAPVFNTPVVTVDLRENLPVGEIITTVEAHDRDSNEFGQVRYFI
PKRGNSLEARKLVRVDPETGRVYLNRHLNYAKHDKIRIIIGARDQGGDNSKVGNKFLEIR
VVDVNDNSPVIQTMIIGASKDNTAYLKETEDTGIIVAQITATDGDSGMNGQVVTTITTRT
LEYPSTRNAGDVTNSDDVTPILGAAVEGFFELEDGFISTLRQLDRESIPGFVVDVRSCDR
GTISRCSFQNLTIFLLDENDNSPVFDHVAPLRLSESTEIGTSVAVVTATDRDALYQPAYR
LVKDNVIVPSSYGVIRYRLEGGKGCFNIDEQSGTLKLAGKLDYETKKKWELVVTARDMGN
PPQSTRTNLRVDVINVNDNKPIFTNPSVSNSSVYATIKSEEIITTLEAMDRDGEKIRYSI
SLENGKKTRAGGKFIVDPKTGALRLNFSNPHLDTMLGDHYITLKAQDSGVPPSAGFTILN
VKVTDLPLHQIISMQKRLNEDVATGDLSVVLIASLAAATVLLIIVLTGVAVRCKRENKEI
RTYNCRSAETRKGWKLSASQGTLTNDVGVASTAKMMSSRDSNLNSVGWSQNGDKRLYSDV
KDPLVKCQISHSSSNVSQRTIERKMTSFSKPNLRSDSLHQVAQQVDGDSGRGDSDHDTGS
YEDKESMQAVEQHPKPVVVHYHNEPCDVAIMEMNDSSNLGPHCTQSCLDIGHSDKCWLPV
YDAPATSGDYVDPRRANTPSYAYQQIISSSPMTPCGLETIRETQPLHSVLSNQTDEQIEE
SYLTEPSYSSNPYYSDSMYAHSYTMPYQHRMDSRSLPHGHTYESAASYVPTQSYVERQHS
ASDLFHDGHNTVAQTQQQQQPEYYPTYAPLNRCTSPSAKSDITKRRSTASLHGELLHRRF
LAVAQGSSRADDLHTRSMTPTQYGQVTMQETQQIIDDIDQLIDT
Nucleotide sequence
Length: 3,269
>Phmamm.CG.MTP2014.S225.g05680.01.t
TGTAGGACAAAACGCTAGAGTCACTTACAAGATGCAGCGAAATACGTTCTTTGGTCTAAA
TGAGTACGAAGACGATACTGGAGCTCGTAGACTTGAATTAGTGGTTGCTGATGAATTAGA
TCATGAACGCTCTGATACTGAAGAACTGACTATTCGGGCTACAGACGACGGAACACCTAT
TAAATCTACCAGTGCTTTACTGCGAGTTAACATTATCGATGCCAACGACAATGCCCCTGT
TTTCAATACTCCGGTTGTTACTGTTGACTTACGAGAAAATCTTCCTGTCGGCGAGATTAT
CACAACGGTTGAGGCGCATGACCGGGACAGCAACGAATTCGGACAAGTTCGATATTTTAT
CCCAAAACGCGGCAACTCTCTGGAAGCACGGAAACTTGTAAGAGTTGACCCAGAAACCGG
ACGGGTGTACCTAAATCGCCACCTAAATTACGCTAAACACGACAAAATTCGAATCATAAT
CGGGGCACGTGACCAGGGCGGCGACAACTCGAAAGTGGGCAACAAGTTTTTGGAGATTCG
TGTTGTTGATGTCAACGATAATTCACCAGTGATTCAAACCATGATCATTGGGGCTTCAAA
GGATAATACCGCATATTTAAAAGAAACCGAGGACACTGGTATAATCGTGGCTCAAATAAC
CGCTACTGACGGAGACAGCGGCATGAACGGCCAAGTCGTAACCACCATTACCACCCGAAC
CCTCGAATACCCAAGTACGCGTAACGCTGGTGACGTCACAAACAGCGATGACGTCACCCC
GATTTTGGGAGCGGCCGTGGAAGGATTTTTTGAGCTGGAGGATGGATTTATCAGCACCCT
ACGACAGCTGGATCGAGAAAGTATCCCTGGATTTGTGGTTGATGTTCGTTCATGCGATCG
CGGAACTATTAGCAGGTGCTCGTTTCAAAACCTCACCATCTTTCTTCTCGACGAAAACGA
CAACTCGCCTGTCTTTGATCACGTGGCACCTCTGCGTCTCTCCGAGAGCACCGAGATCGG
TACTTCGGTTGCTGTGGTAACCGCGACGGACCGTGACGCCCTGTATCAACCAGCGTATCG
ACTAGTTAAGGACAATGTCATCGTTCCATCGTCATATGGAGTTATCCGCTATCGACTGGA
AGGTGGTAAAGGATGTTTTAACATCGACGAGCAATCAGGCACGCTCAAACTTGCTGGAAA
ACTTGATTACGAAACCAAGAAAAAGTGGGAGCTTGTGGTGACGGCCAGGGACATGGGGAA
TCCCCCACAATCGACGCGGACCAACTTGCGTGTTGACGTCATCAACGTGAATGACAACAA
GCCGATTTTCACCAATCCCTCTGTATCGAATTCGTCAGTGTACGCGACCATAAAAAGCGA
AGAAATCATCACTACACTGGAGGCAATGGATAGAGATGGAGAAAAAATTCGTTACTCGAT
TTCATTGGAGAATGGTAAAAAGACGAGAGCTGGAGGAAAATTCATTGTTGATCCAAAAAC
GGGTGCATTGCGTCTCAATTTTAGCAACCCACATCTGGATACTATGCTTGGTGATCACTA
CATCACTCTTAAGGCGCAAGATTCCGGCGTCCCTCCTTCAGCTGGCTTCACAATTCTCAA
CGTCAAGGTAACTGATCTTCCATTGCACCAAATCATCTCCATGCAAAAGCGACTGAATGA
AGATGTGGCCACTGGAGATCTATCGGTTGTGCTGATTGCATCACTCGCTGCAGCCACTGT
TCTTCTCATTATTGTCCTCACCGGTGTGGCAGTGAGATGTAAACGGGAAAACAAAGAAAT
ACGGACTTACAATTGCCGAAGTGCAGAAACCCGTAAAGGCTGGAAGTTAAGCGCCAGTCA
GGGCACGCTCACTAATGACGTAGGCGTTGCGTCAACAGCCAAGATGATGTCATCGCGCGA
TTCTAACTTAAACAGTGTGGGGTGGAGTCAAAACGGAGACAAAAGGTTGTATAGCGACGT
GAAAGACCCATTGGTGAAATGTCAGATATCACACAGCTCATCCAACGTAAGTCAACGCAC
TATCGAAAGAAAAATGACAAGTTTCTCAAAGCCCAACTTGAGATCAGACAGCTTACACCA
GGTGGCGCAACAGGTCGATGGAGACAGCGGCAGAGGGGACAGTGACCACGACACAGGCAG
TTATGAGGACAAAGAATCAATGCAAGCTGTTGAGCAACATCCAAAACCGGTCGTAGTTCA
CTACCATAACGAACCTTGCGACGTTGCTATTATGGAAATGAACGACAGCAGCAACCTCGG
ACCTCATTGCACACAGAGCTGCTTGGATATCGGCCATAGTGATAAATGCTGGCTTCCAGT
TTACGACGCACCAGCCACCAGTGGTGATTACGTTGACCCAAGGCGCGCAAACACCCCTTC
ATACGCCTATCAGCAAATCATCAGTAGCAGTCCAATGACTCCATGCGGCTTAGAGACAAT
CCGAGAAACCCAGCCCCTGCATTCAGTTCTCTCAAACCAGACGGACGAACAAATTGAAGA
AAGCTATCTGACTGAACCAAGTTATTCAAGCAATCCTTATTACAGCGACTCAATGTACGC
TCATAGCTACACCATGCCTTACCAGCATCGCATGGATTCGCGCTCGCTCCCGCATGGACA
CACATACGAGAGTGCAGCATCCTATGTACCCACGCAGAGCTACGTCGAACGCCAGCATTC
AGCCTCAGACCTTTTCCACGACGGACACAATACAGTAGCACAGACACAGCAGCAGCAACA
ACCTGAATATTATCCCACATATGCGCCTTTAAATCGTTGCACTAGTCCTTCTGCGAAAAG
TGACATCACAAAAAGACGTTCTACTGCATCGCTTCACGGTGAACTCTTGCACCGACGTTT
TCTCGCCGTCGCTCAGGGTTCATCTCGTGCCGATGACCTCCATACAAGGTCAATGACCCC
TACGCAGTACGGTCAGGTCACCATGCAGGAGACACAGCAAATTATCGACGACATTGACCA
GTTGATTGATACATAAAAGGGTCACGTTTTTCTAAATGACGCTTTTAACCCAAATGAGTT
CCAAACTCTTGCTTTTCTTCAACATTTTTACATCATTTGCCATCCAATGGCGACTTGTAC
CGTTTATTGGCTGACAACCTCTTTTTGCTTTTTATGCTGAAATCGGACTACAATCATGTG
TGATGATTTTTTTAACGCCCCCCTAAATGTCTTCTGAAATCATGCTGTCGTTTTTGTGTT
TTGATCATTTTTGTATTTTTATTTTTCCC
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[2-81] 5.57E-10 - T[69-194] 1.06E-23 - T[179-326] 6.42E-13 - T[313-448] 1.71E-22 - T[436-545] 8.71E-12 |
| SMART |
Cadherin (IPR002126) - T[2-79] 8.0E-10 - T[103-189] 7.7E-18 - T[219-323] 1.1E-12 - T[346-441] 7.4E-20 - T[466-547] 0.011 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[69-79] . - T[179-189] . |
| PRINTS |
Cadherin (IPR002126) - T[81-110] 2.8E-22 - T[155-167] 2.8E-22 - T[170-189] 2.8E-22 - T[391-417] 2.8E-22 - T[425-442] 2.8E-22 |
| Pfam |
Cadherin (IPR002126) - T[88-181] 9.3E-11 - T[332-433] 1.2E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDH1_HUMAN | 28.523 % | 201 | 6.27E-53 |
| PCD18_HUMAN | 26.69 % | 231 | 1.77E-62 |
| PCD17_HUMAN | 28.914 % | 226 | 6.22E-61 |