- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S241.g05988.01.t
Possible name(s)
DAW1; PAFAH1B1; SPAG16
Gene model
Location
S241 [133,467 / 139,468]
Amino acid sequence
Length: 609
>Phmamm.CG.MTP2014.S241.g05988.01.p
MKQDTKCNLNVTVTEDSDGEYEYEEVPVDDDLSVTTDLAEDLHKAVNVIEEARQDEKAFH
QKLESAPVASVIQRPEVVDDFVRNFMLRMGLRRTLECFQTEWYEMQQKGLLGEEDIGVVP
DVYSKNQALNDEVKHLKQELEKYKLAASKAKETYIKLQKERDFHKINHKRIVQEKNRLIT
DIKRLKKHYSSYEPTLRQLKHKYELAMKEKMLTKLERDRAVGQVTGLQATLRNVETGKDE
KIPPLSGYRVERTVLPDGPTQMSLREAREQLVSNVRQETISSPSAVPQKHRSEFPPDCRV
NPYLTSVKGPPAHLTRTGGFRQTGCIRAHDLSVSNVTLHPRKQIAVTTSDDHLWKMWAIP
GGDIIMTGEGHTDWIADCDFHPGGSQLATASGDACVKVWDFAKAACLLTFPDHTHAVWGV
SWHSCGDFLASCSMDNTSKIWDVNSEKCLATLRGHADSVNSIQFLYFANTLLTSSADKTL
SLWDARTGLCAQTFYGHMHSVNNAVFNLKGDTIGSCDSYGTVKFWDVRHVSPMMTVDVGP
HPANRVAFDPSGHLLAVASNDATVKMIEIGTSEVTLLAGHDDAVQAVDFDKGGQFMISGG
SDGSLRMWS
Nucleotide sequence
Length: 1,830
>Phmamm.CG.MTP2014.S241.g05988.01.t
ATGAAACAAGACACCAAATGTAATCTCAATGTAACAGTAACAGAAGATTCTGATGGAGAA
TATGAATATGAGGAGGTCCCTGTGGATGATGACTTGAGTGTTACAACAGATTTGGCTGAG
GACCTTCATAAAGCTGTTAATGTCATAGAAGAGGCAAGACAAGATGAAAAGGCATTTCAT
CAAAAGCTTGAGAGTGCACCTGTTGCATCTGTAATTCAACGTCCAGAGGTTGTTGATGAT
TTTGTGAGAAATTTCATGCTAAGAATGGGATTAAGAAGGACACTGGAGTGTTTTCAAACA
GAATGGTATGAAATGCAACAAAAAGGTTTGCTCGGTGAGGAAGATATTGGGGTTGTTCCA
GATGTGTATAGCAAAAATCAAGCTTTAAATGATGAAGTCAAGCATCTGAAACAGGAACTT
GAAAAATATAAACTTGCTGCAAGCAAAGCAAAAGAAACTTACATCAAGTTGCAAAAAGAA
AGAGACTTTCACAAAATCAACCACAAAAGAATTGTCCAAGAGAAAAACAGACTCATCACT
GACATCAAAAGATTAAAGAAACACTACAGTTCATATGAGCCGACACTGAGACAGCTAAAA
CACAAGTACGAGCTTGCAATGAAAGAAAAGATGTTAACCAAGTTGGAAAGAGATCGTGCA
GTTGGCCAGGTTACAGGTTTACAAGCTACTCTCCGCAATGTTGAAACTGGAAAAGATGAA
AAAATACCTCCATTATCAGGATACAGGGTAGAACGAACAGTCTTACCAGATGGTCCCACA
CAAATGTCACTCCGTGAGGCAAGAGAGCAGCTCGTTTCGAATGTTAGACAAGAAACCATC
AGTTCACCATCTGCAGTTCCACAAAAACATAGAAGTGAATTTCCACCAGACTGCAGAGTA
AACCCATACCTGACAAGTGTTAAAGGTCCACCTGCCCACCTAACCCGCACTGGAGGTTTC
AGACAAACGGGATGCATTCGGGCACATGATCTTTCTGTCAGCAATGTGACTTTGCACCCA
CGCAAGCAAATAGCTGTAACGACATCAGACGACCATTTGTGGAAAATGTGGGCCATTCCT
GGTGGTGACATAATAATGACTGGCGAAGGTCATACAGATTGGATTGCAGATTGTGACTTT
CATCCAGGAGGGTCCCAACTTGCAACTGCGAGTGGGGATGCCTGTGTGAAAGTATGGGAT
TTTGCCAAAGCTGCTTGTCTACTTACTTTTCCTGATCACACACATGCGGTGTGGGGCGTT
TCCTGGCATTCCTGTGGAGATTTTCTTGCTTCATGCTCTATGGACAACACCTCTAAAATT
TGGGATGTTAACAGTGAGAAATGCTTGGCTACATTAAGAGGACATGCGGATTCAGTAAAC
AGCATTCAGTTTCTCTACTTTGCAAACACTCTGTTAACATCATCTGCTGACAAAACCCTT
TCCCTATGGGATGCCAGAACTGGTTTATGTGCACAGACATTCTATGGACACATGCACTCA
GTCAATAATGCAGTGTTCAATCTTAAGGGAGACACCATTGGTTCATGTGACAGTTATGGA
ACAGTGAAGTTTTGGGATGTTCGACATGTCTCACCAATGATGACAGTTGATGTTGGTCCA
CACCCAGCAAACAGAGTTGCATTTGATCCATCAGGACATCTTTTGGCAGTAGCAAGTAAC
GATGCAACTGTAAAGATGATTGAAATTGGAACCAGCGAAGTAACGTTGCTAGCAGGGCAT
GACGACGCAGTGCAAGCTGTCGATTTTGACAAAGGGGGTCAATTTATGATATCAGGAGGC
TCAGATGGAAGTCTACGAATGTGGTCATGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[313-430] 3.6E-27 - T[431-609] 2.6E-49 |
| SMART |
WD40_repeat (IPR001680) - T[319-358] 0.59 - T[361-400] 5.1E-9 - T[403-442] 6.1E-9 - T[445-484] 3.0E-8 - T[487-526] 0.0038 - T[529-568] 0.074 - T[570-609] 5.5E-7 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[321-608] 4.58E-73 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[326-609] 56.711 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[326-367] 9.807 - T[368-409] 13.048 - T[410-451] 13.616 - T[452-493] 13.951 - T[494-535] 9.673 - T[577-609] 16.29 |
| Pfam |
WD40_repeat (IPR001680) - T[365-400] 1.6E-4 - T[406-442] 2.0E-6 - T[446-484] 3.9E-6 - T[577-609] 1.3E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[387-401] . - T[429-443] . - T[471-485] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[429-443] 8.9E-7 - T[471-485] 8.9E-7 - T[596-609] 8.9E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPG16_HUMAN | 48.505 % | 602 | 0 |
| DAW1_HUMAN | 31.01 % | 144 | 1.08E-37 |
| LIS1_HUMAN | 31.923 % | 142 | 3.99E-37 |