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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S245.g06050.01.t

Possible name(s)

CD209; CLEC4M; COLEC12

Gene model

Phmamm.CG.MTP2014.S245.g06050

Location

S245 [19,758 / 20,645]

Sequences

Amino acid sequence

Length: 97

>Phmamm.CG.MTP2014.S245.g06050.01.p
MRDPIIRRRIVDFLLRPLGGAFWIGLTDLDVEGEWKYIDGVAITESNSNFKTNQPNNVGG
ELLKDANCAVIKEYDDFQMDDINCDLIRNSICEKSRI

Nucleotide sequence

Length: 294

>Phmamm.CG.MTP2014.S245.g06050.01.t
ATGCGAGATCCAATAATTCGAAGACGAATAGTCGATTTCTTGCTTCGTCCTCTTGGCGGT
GCATTTTGGATCGGATTAACGGACCTTGATGTGGAAGGTGAATGGAAATACATTGATGGT
GTAGCAATAACAGAGAGCAATTCTAATTTCAAAACCAACCAACCAAACAACGTTGGAGGC
GAATTGTTAAAGGACGCCAATTGTGCTGTCATAAAAGAATACGATGACTTCCAAATGGAC
GATATTAACTGTGATTTAATCCGAAACTCTATTTGCGAGAAAAGTCGAATTTGA

InterProScan

ProSiteProfiles
C-type_lectin-like (IPR001304) - T[1-93] 11.546
Gene3D
C-type_lectin-like/link_sf (IPR016186) - T[7-97] 1.0E-16
SUPERFAMILY
CTDL_fold (IPR016187) - T[14-95] 6.3E-17
Pfam
C-type_lectin-like (IPR001304) - T[21-94] 2.0E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value