- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S256.g06222.01.t
Possible name(s)
NXF1; NXF2; NXF2B
Gene model
Location
S256 [99,062 / 105,946]
Amino acid sequence
Length: 435
>Phmamm.CG.MTP2014.S256.g06222.01.p
SCPKHCKNKKLIASDTPTMSNRGKYRGKYRLESDNYDDSGNRYSQHDDRTGPIKRGRGGR
GRSHRGGGRSSGGGYRGNSHRSDSGYRGNRGGRYNNNRGRGQGRGSYSRYNNAQDDYNQE
DEDGDVNMDGGDSKPTRFNPYARPNRRGTKNRSDSSNKPHQHQRQENWYQITIVEGEHID
EGWLHQELQTVNMIQYQPVQYHFDGRNASFFLNDRTAAEAIRNCTKKLTSPNGEKITIIM
RPSIYPPLTETQITKIKEVLSRRFDATTHHLDCTSFALDQELRGERILVKLSDASHLYVV
TKIIRDHISSLTSLDLSNNRIVRLQGLSQLTKYTPNLKILNLSKNLVKHVKEFEAMRHCD
LSELTLDQNPMCSYYQSQAEYINDIREYFPNVLKLDGQTLPPPVKFDVENEALPVSLPNF
LPAHGLEVIKNFIET
Nucleotide sequence
Length: 1,306
>Phmamm.CG.MTP2014.S256.g06222.01.t
CTCTTGTCCCAAACATTGTAAAAATAAAAAGCTGATTGCTTCTGACACACCAACAATGTC
AAACAGAGGAAAATATCGCGGAAAATACAGACTTGAAAGTGACAACTATGACGACAGCGG
AAACCGATATTCTCAACATGACGACCGGACAGGCCCCATAAAGCGGGGCAGGGGTGGTCG
CGGCAGATCTCACAGGGGAGGGGGTCGCAGCAGTGGTGGTGGTTACCGTGGAAACAGTCA
CCGCTCTGATTCTGGGTATCGGGGTAATCGAGGTGGCAGGTATAATAATAACAGGGGCCG
TGGACAGGGAAGGGGCTCGTATTCTCGATACAACAATGCACAAGATGATTACAACCAAGA
AGATGAAGACGGAGACGTAAATATGGATGGAGGAGATTCAAAACCAACCAGATTCAACCC
CTATGCCAGACCTAATAGACGAGGTACCAAGAACCGATCAGATTCAAGCAATAAACCACA
TCAACATCAGAGGCAGGAAAACTGGTACCAAATCACAATCGTTGAAGGGGAACATATAGA
CGAGGGGTGGTTACATCAAGAACTCCAGACTGTCAACATGATACAGTACCAACCAGTCCA
ATATCATTTTGATGGCAGAAATGCTTCCTTCTTTTTGAACGATCGTACCGCTGCAGAAGC
AATACGTAACTGTACAAAAAAACTCACATCACCAAATGGGGAAAAGATCACGATCATAAT
GAGACCCTCCATTTACCCTCCATTGACTGAAACCCAAATCACTAAAATTAAGGAAGTATT
AAGCCGACGCTTCGATGCTACTACCCATCATCTCGACTGTACATCATTTGCTCTAGATCA
AGAGTTACGGGGAGAACGGATTCTAGTAAAACTTTCAGATGCATCTCATCTTTACGTGGT
CACAAAAATTATCAGGGACCACATTTCATCACTCACTTCACTGGATTTGTCAAACAACCG
AATCGTTCGACTTCAGGGTCTCAGCCAACTTACTAAATACACTCCTAATCTCAAAATCCT
GAATCTCTCCAAAAATCTGGTTAAACATGTGAAAGAATTTGAGGCCATGAGACACTGTGA
CCTTTCAGAGTTGACCTTGGATCAAAACCCAATGTGTAGTTACTATCAATCACAAGCAGA
ATATATCAATGACATCAGAGAATATTTTCCCAACGTTTTAAAACTGGATGGTCAGACTCT
GCCACCACCAGTTAAATTTGATGTTGAAAATGAAGCCTTGCCTGTATCACTGCCTAATTT
CCTGCCTGCCCATGGATTGGAAGTCATTAAGAACTTCATTGAAACG
| PANTHER |
NXF_fam (IPR030217) - T[111-422] 2.5E-58 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[145-248] 5.1E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[157-247] 3.59E-17 |
| Pfam |
Tap_RNA-bd (IPR015245) - T[166-246] 6.7E-24 |
| ProDom |
Tap_RNA-bd (IPR015245) - T[168-235] 3.0E-7 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[249-406] 5.8E-38 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[310-331] 9.391 - T[336-357] 7.057 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NXF1_HUMAN | 33.415 % | 206 | 5.22E-60 |
| NXF2_HUMAN | 30.743 % | 158 | 1.3E-42 |
| NXF5_HUMAN | 30.108 % | 144 | 4.95E-39 |