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TRANSCRIPT CARD

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  1. Transcript 'Boschl.CG.Botznik201...'
  2. Transcript 'Mooccu.CG.ELv1_2.S66...'
  3. Transcript 'Haaura.CG.MTP2014.S1...'
  4. Transcript 'Phmamm.CG.MTP2014.S4...'
  5. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2631.g16899.01.t

Possible name(s)

NLRP12; RNH1

Location

S2631 [12,973 / 17,202]

Sequences

Amino acid sequence

Length: 656

>Phmamm.CG.MTP2014.S2631.g16899.01.p
MMLYKNPDLSLYWYVPIYCIMAFSYFANTENMESVSFTLTSLLTATLIDYARTDHMRDRG
IELKKLAHLAWKGIWSHQCIFPMIDLEQVGLDYSSVQAFLQIALSTGLRINMSILQGDKL
IFFPHLVWQEFFASIHAMLKMSITEVYNYCKNTKRTSEVVTKFLFGLCNRKIFNQLQTII
PEYSSQKWVEKKEFLTQYLRSRVRWNFKSLLETGSLLLEAQDDDLLAAVIAALQSSTDKA
SITLQGSVLPSDAVSLCYVLKGFTNKGGSIERIAAQSDPKENKLSNFDEDDFNSQGNILS
QFPAQPAYHSYEYPIKEFVLSDVKFGDDGTKAVSGCIPQVEQLAIERCNITQIGIPDLAG
KLSELSEPTKKGGLADVPEENKPCNFDGDAFNRFADEIKSGIKIKEFVLSDVKFGDEGTK
AVSSCIPQVEQLAIERCNITQNGIPDLAEKLLELDEPITELKLGGNMLTDTGAELLAPGI
AYIKELYLDDCDITHITELKLGGNMLTDTGAELLAPSISYIKKLYLDDCDITHVGMELLS
LAGNKVGDEGAKSLSTCLNQIKKLILLMCNITGQGVLELATKAKELEHKMDLLDLSENEI
GEGGLQALSLCTGKIDTLRLLFCSVSNQPLEGINVIYSDDLNDEKETLSKRRKTEL

Nucleotide sequence

Length: 1,971

>Phmamm.CG.MTP2014.S2631.g16899.01.t
ATGATGTTGTATAAAAATCCAGATCTTTCTCTGTATTGGTATGTTCCAATCTACTGCATC
ATGGCTTTCTCTTACTTTGCCAACACAGAAAACATGGAGTCAGTTTCTTTTACCCTAACT
TCTCTTTTGACAGCAACTTTAATTGATTATGCACGAACCGATCACATGCGAGATAGGGGT
ATTGAGCTTAAAAAGTTGGCACATCTTGCTTGGAAAGGCATTTGGAGTCACCAGTGCATT
TTCCCAATGATAGATCTCGAACAGGTGGGCCTGGATTACAGTTCAGTTCAGGCATTTCTT
CAGATAGCCCTGTCCACAGGTTTGAGAATTAACATGAGTATTCTTCAAGGTGATAAGTTG
ATCTTTTTTCCCCATTTGGTATGGCAAGAGTTCTTTGCTTCCATCCATGCAATGCTAAAA
ATGTCAATAACAGAAGTATATAACTACTGTAAAAACACAAAGAGGACCTCAGAGGTTGTT
ACAAAATTTCTTTTTGGTTTGTGCAACCGCAAGATTTTCAACCAACTGCAAACTATCATT
CCTGAGTACTCAAGCCAAAAATGGGTCGAGAAAAAAGAATTTCTCACACAATATCTGAGA
AGCAGAGTCAGATGGAATTTTAAAAGCTTGCTTGAAACTGGGTCTCTTTTGTTAGAAGCC
CAAGATGATGATTTGCTTGCTGCTGTTATTGCTGCTTTGCAATCCAGCACAGACAAAGCT
TCCATAACTTTGCAAGGGTCAGTGCTCCCAAGCGATGCTGTTAGTTTGTGCTATGTATTG
AAAGGTTTCACAAACAAGGGTGGGAGTATAGAAAGAATAGCTGCCCAATCCGATCCTAAA
GAAAACAAACTATCCAACTTTGATGAAGATGACTTTAATAGCCAGGGTAACATATTAAGT
CAATTTCCCGCACAACCAGCATACCATTCCTACGAATATCCGATCAAAGAATTTGTCCTT
TCCGATGTAAAGTTTGGAGATGATGGAACCAAAGCTGTGTCAGGTTGTATTCCTCAGGTC
GAACAACTTGCAATTGAGAGATGCAACATTACACAAATTGGAATTCCAGACCTTGCTGGG
AAATTGTCTGAACTGAGTGAACCGACCAAAAAAGGTGGCCTTGCCGATGTTCCTGAAGAA
AACAAACCATGCAACTTTGATGGAGATGCCTTTAATAGATTCGCTGATGAAATTAAATCT
GGTATTAAGATCAAAGAATTTGTCCTTTCCGATGTAAAGTTTGGAGATGAAGGAACCAAA
GCTGTGTCAAGTTGTATTCCTCAGGTCGAACAACTCGCAATTGAGAGATGCAACATCACA
CAAAATGGAATTCCAGACCTTGCTGAGAAACTGTTGGAACTGGATGAACCGATAACTGAA
CTAAAACTTGGTGGAAACATGCTGACTGACACTGGTGCAGAACTTCTTGCTCCCGGCATC
GCTTATATCAAGGAGCTGTATCTAGATGATTGTGACATCACTCATATAACTGAACTAAAA
CTTGGTGGGAACATGCTGACAGATACGGGTGCAGAACTTCTTGCTCCGAGCATCTCTTAT
ATCAAGAAGCTGTATCTAGATGATTGTGACATCACTCATGTTGGGATGGAACTCCTAAGC
CTTGCTGGAAACAAAGTTGGTGATGAAGGTGCTAAATCACTCTCTACATGTTTGAACCAG
ATAAAGAAACTCATCTTGCTCATGTGCAACATCACAGGGCAGGGTGTGTTGGAACTTGCC
ACAAAAGCAAAAGAACTTGAACATAAGATGGACCTACTGGATTTATCTGAAAATGAGATT
GGAGAAGGAGGACTTCAAGCACTGTCCCTTTGCACAGGAAAAATAGACACACTGAGGCTA
CTGTTTTGCAGTGTGTCGAATCAACCTTTGGAGGGCATTAATGTCATTTACTCAGATGAC
TTAAATGATGAAAAAGAAACACTTTCCAAGCGTCGAAAAACTGAATTATAG

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[279-630] 1.0E-42
Pfam
Leu-rich_rpt (IPR001611) - T[458-477] 1.2 - T[494-515] 0.058 - T[539-555] 0.028

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value