Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2669.g16939.01.t

Possible name(s)

NLRC3; NLRP5; TCTE1

Gene model

Phmamm.CG.MTP2014.S2669.g16939

Location

S2669 [4,797 / 8,762]

Sequences

Amino acid sequence

Length: 330

>Phmamm.CG.MTP2014.S2669.g16939.01.p
MYGPNRALTLQMKELTLSHNPIGDKGAEALATCLHNVDLLNLWRCGITVIGTTALSSYIN
KRSNPLKGLTLGNNPISDKGAEAWNTSLERNQIGNDGAKYLATCIHNIDELNLTNCAITD
DGLDELSSAIYKSPYQLANCFLWNDYEFINNTSSVVGSEGAKLEVGGCIVEIPQDALSEE
TTIQLTSYYGKRKQADQLTPTLKCEPNHFKFKKDIFVTLPTCYISEKTQQVVVQTSVNGL
EWNDIETTYYQDSMKIKFSTTHFTWFVVKWIKQFSTKMKFLKCELGENLEIEEPKTRLLY
ISVFDDVGGINWESANKERKEIFFTSFQTR

Nucleotide sequence

Length: 993

>Phmamm.CG.MTP2014.S2669.g16939.01.t
ATGTATGGCCCTAACCGAGCACTTACTTTACAGATGAAAGAGTTAACACTCAGCCACAAC
CCAATCGGCGACAAAGGTGCAGAAGCGTTAGCAACCTGCTTACACAATGTTGACCTACTA
AATCTTTGGAGATGTGGAATCACCGTCATTGGAACAACAGCGTTGTCATCATACATCAAC
AAACGGTCAAACCCGCTGAAAGGGTTAACGCTCGGCAACAATCCAATCAGCGACAAAGGT
GCAGAAGCATGGAATACATCTCTGGAGCGCAATCAAATAGGAAACGACGGGGCAAAGTAT
TTAGCGACTTGCATTCACAATATTGACGAACTTAATCTTACTAATTGTGCGATAACAGAT
GATGGATTGGATGAGTTGTCATCAGCCATTTACAAAAGTCCCTATCAGTTGGCAAATTGT
TTTTTGTGGAACGACTACGAGTTTATCAACAACACGTCATCAGTTGTTGGATCGGAGGGT
GCTAAACTTGAGGTTGGTGGATGTATTGTTGAAATTCCACAAGACGCTTTGAGCGAAGAG
ACAACAATCCAACTTACTTCGTACTACGGAAAACGAAAACAAGCGGATCAGCTGACTCCT
ACTCTTAAATGTGAACCAAATCATTTTAAATTCAAAAAAGACATTTTCGTCACTTTGCCA
ACCTGCTATATTTCTGAAAAAACACAACAAGTTGTGGTGCAAACAAGTGTTAATGGTTTG
GAATGGAACGATATCGAAACCACATACTACCAAGACAGCATGAAGATCAAATTTTCCACC
ACACATTTTACATGGTTTGTTGTGAAATGGATTAAACAGTTTTCAACTAAAATGAAGTTT
CTGAAATGCGAATTGGGAGAGAATTTAGAAATCGAAGAACCAAAAACACGGTTGCTGTAT
ATTTCTGTGTTCGATGATGTTGGCGGAATAAATTGGGAAAGTGCAAACAAGGAAAGAAAG
GAGATTTTTTTCACCTCATTTCAAACAAGGTGA

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[5-88] 5.9E-15 - T[89-144] 4.6E-6
Pfam	Leu-rich_rpt (IPR001611) - T[12-31] 1.0E-4 - T[88-102] 1.5 - T[110-127] 0.11
Pfam	ZU5_dom (IPR000906) - T[152-235] 2.3E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value