- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S267.g06396.01.t
Possible name(s)
LGR4; LRIG2; LRIG3
Gene model
Location
S267 [99,404 / 107,618]
Amino acid sequence
Length: 745
>Phmamm.CG.MTP2014.S267.g06396.01.p
MALSRRIATAAALCLVAVSCFHMTKAIGETEWFSSRPRRMLWSHTVFKLTSATPDECAER
CISMRGRCLSFDFHRRTRSCFGRRNGDEVLDRRHRPHVKRNDHYDFYVSSRDRIQSALRT
PRGPARVVERPRVSQRPRVERPRVERPRRPYAPVTRPARVYPSRRPVVIARPVRPTRPVR
PTRPTRPRTTPTTLPATTITSGAVCLDPVGIESGVIPDQNFEAVSSYWRYTPEKGRLNGE
FTWMAEVATENQTLEINLGRDTNVIAIGTQGFSYFFRDNYVKSYEIYYENRRTNGRFFAY
KEGGKTKEISLVDNNIQTLGAKAFQWQLPLIKLDMSENSISDINPEAFGAKSKKYGSKVL
DLNIALFWEKDLQDLEILDLSSNSISVLSPSTFGHLSSLKQLHMNRNSIRKIHPLAFNHF
TMLQELHLAVNRIDEIPDGVFASTASTLLLLDMSRNEIKKLKSTTFKGLKLLQSLKLSHN
LLTQLFDAQTKTGVFMHLTSLKMLKLDSNRIEMLQDLSLEGLPQLQELTLTGNLIKVFPN
VNLPSLERLDLSANLLSNINESHLQELPFLERLDLSDNVIIDVTANAFSECHRLRSLHLE
RNRLKTPYTTWMTSQRFRHKRPHMNSCAGHLAGNAWLCDCRTMAFARSVAKSRAATVENE
KIYVNSDVMMCDGPEQFKGLTLTEFAVNSNLKCDVTISLKMQYWLWILFGSVVLFVIFYA
GKYFSVRFTCWIGDKTFTKPNSKHL
Nucleotide sequence
Length: 2,238
>Phmamm.CG.MTP2014.S267.g06396.01.t
ATGGCGCTGTCTCGTCGCATTGCAACTGCGGCAGCTTTGTGCTTGGTCGCGGTTTCTTGT
TTCCACATGACAAAAGCAATAGGCGAAACCGAATGGTTCTCCAGTCGACCTCGTCGTATG
CTTTGGTCTCACACCGTATTCAAGCTCACAAGCGCCACTCCCGACGAGTGTGCGGAGCGA
TGCATATCCATGAGAGGGCGCTGTTTGTCCTTCGATTTTCACAGGCGCACTCGGTCGTGC
TTTGGAAGACGCAATGGAGACGAAGTCCTCGACAGACGTCATCGTCCTCACGTCAAGCGG
AACGACCACTACGATTTCTATGTCTCATCAAGGGATCGCATACAATCCGCACTGAGAACC
CCACGAGGCCCGGCTCGTGTCGTTGAGCGCCCTCGCGTGTCACAACGCCCTCGTGTAGAG
CGCCCCCGTGTGGAACGCCCTAGAAGGCCGTATGCTCCAGTCACTCGCCCAGCCCGTGTT
TATCCATCAAGGCGTCCCGTAGTTATAGCCCGACCTGTAAGGCCAACACGACCCGTCAGA
CCAACGCGACCAACGAGGCCACGCACAACTCCAACTACACTTCCAGCGACAACGATCACT
TCCGGAGCTGTGTGTCTTGACCCCGTTGGTATCGAATCAGGGGTGATACCTGACCAAAAC
TTTGAAGCTGTCTCGTCCTATTGGCGCTATACTCCTGAAAAGGGACGACTTAACGGAGAG
TTTACTTGGATGGCTGAAGTGGCAACAGAAAATCAAACATTAGAGATTAATTTGGGCAGG
GATACCAATGTTATTGCTATCGGAACCCAGGGGTTTTCATACTTCTTCAGAGACAACTAT
GTAAAAAGTTATGAGATCTACTACGAAAACCGACGGACAAACGGAAGGTTCTTTGCTTAC
AAAGAAGGTGGTAAAACAAAGGAAATTTCTTTGGTTGACAACAACATTCAGACACTTGGG
GCAAAGGCATTTCAATGGCAATTGCCACTGATCAAGTTGGATATGTCAGAAAACTCAATA
TCAGACATAAATCCAGAAGCTTTTGGTGCTAAGTCAAAGAAATATGGCAGTAAAGTTCTT
GACCTTAACATTGCATTATTTTGGGAAAAGGATTTACAAGATTTGGAAATATTAGATCTT
TCATCTAATTCAATCTCAGTTCTGTCTCCAAGCACCTTTGGTCACCTATCATCTTTAAAA
CAGCTTCACATGAATAGGAACTCAATTCGAAAAATCCATCCATTGGCATTTAATCACTTT
ACGATGTTACAAGAGCTTCACCTGGCAGTCAACAGAATCGATGAAATACCTGATGGAGTA
TTTGCCTCAACTGCATCTACTTTGCTTTTGTTGGACATGTCTAGAAATGAAATCAAGAAA
CTAAAGTCAACTACATTTAAGGGATTAAAACTGCTGCAAAGTTTGAAACTGAGTCACAAT
TTGCTGACTCAGCTTTTTGATGCACAAACCAAAACTGGAGTCTTCATGCATTTAACTTCA
CTTAAAATGCTGAAACTGGATTCCAACAGAATAGAAATGTTGCAAGATTTATCGCTGGAG
GGACTTCCCCAACTCCAGGAACTTACGTTGACCGGAAACCTCATAAAAGTGTTTCCCAAT
GTAAATTTACCGAGCCTGGAAAGGCTGGACTTAAGCGCGAACCTACTATCAAACATTAAC
GAAAGTCATCTTCAGGAATTACCGTTTTTGGAGCGGTTAGACTTGTCGGATAACGTCATA
ATTGACGTCACTGCTAACGCTTTTTCCGAATGTCATCGGCTACGAAGCTTACACCTTGAG
CGCAACCGTTTGAAAACGCCATATACGACATGGATGACGTCACAAAGATTTAGGCACAAA
CGTCCACACATGAATTCGTGTGCAGGACACCTAGCGGGCAATGCGTGGTTGTGCGACTGC
CGCACGATGGCGTTCGCGAGATCTGTTGCCAAATCCCGAGCGGCCACAGTGGAAAACGAA
AAAATCTACGTCAACTCTGACGTCATGATGTGTGATGGACCGGAACAATTTAAAGGCCTA
ACTTTGACTGAATTCGCAGTAAATTCCAACTTGAAGTGTGACGTCACAATATCGTTGAAA
ATGCAATACTGGTTGTGGATTTTATTCGGATCAGTTGTACTGTTTGTGATTTTTTATGCA
GGAAAGTATTTTTCGGTCCGATTTACTTGTTGGATCGGCGACAAAACATTCACCAAGCCA
AATTCAAAGCATTTGTGA
| ProSiteProfiles |
Pan_app (IPR003609) - T[20-111] 7.347 |
| Pfam |
Pan_app (IPR003609) - T[43-87] 1.0E-5 |
| Gene3D |
Galactose-bd-like_sf (IPR008979) - T[200-327] 1.7E-19 |
| SUPERFAMILY |
Galactose-bd-like_sf (IPR008979) - T[205-307] 8.41E-17 |
| ProSiteProfiles |
FA58C (IPR000421) - T[205-302] 12.816 |
| Pfam |
FA58C (IPR000421) - T[224-302] 1.1E-6 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[305-326] 4.585 - T[329-350] 6.287 - T[374-395] 7.173 - T[398-419] 6.926 - T[422-443] 6.749 - T[447-468] 5.71 - T[471-492] 6.064 - T[500-521] 6.865 - T[524-544] 6.133 - T[545-565] 7.211 - T[569-590] 6.334 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[328-350] 130.0 - T[372-395] 0.0043 - T[396-419] 0.0096 - T[420-443] 0.11 - T[448-468] 190.0 - T[469-488] 100.0 - T[498-521] 1.4 - T[522-542] 150.0 - T[543-566] 20.0 - T[567-590] 6.1 |
| Gene3D |
LRR_dom_sf (IPR032675) - T[363-445] 5.9E-18 - T[446-702] 7.7E-43 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[375-433] 1.3E-13 - T[492-535] 4.5E-8 - T[544-604] 1.5E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LGR4_HUMAN | 30.33 % | 102 | 3.94E-22 |
| LRIG2_HUMAN | 29.31 % | 102 | 2.73E-22 |
| LRIG3_HUMAN | 26.923 % | 108 | 5.36E-24 |