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TRANSCRIPT CARD

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  1. Clone 'cima8110165' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Molecular Tool 'Cytochalasin' > 
  4. Clone 'cima876887' > 
  5. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S269.g06421.01.t

Possible name(s)

ACTA2; ACTB; ACTG1

Gene model

Phmamm.CG.MTP2014.S269.g06421

Location

S269 [8,083 / 10,860]

Sequences

Amino acid sequence

Length: 387

>Phmamm.CG.MTP2014.S269.g06421.01.p
MDDVPGLVVDNGSGMCKAGFAGDDAPRAVFPAIVGRPRHQGVMVGMGQKDSYVGDEAQSK
RGILTLAYPIEHGIVTNWDNMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ
IMFETFNTPAMYVAIQAVLSLYASGRTTGYALPHAIIRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPE
TLFQPAFIGMESAGVHETTYNSIMKCDVDIRKDLYANGGGDRKKSSCPSLLLNANTSYGL
EDLFSHPSPPSNRCGSQIKSIADRIQKEISALAPPTMKIKIIAPPERKYSVWIGGSILAS
LSTFQQMWISKQEYDESGPSIVHRKCF

Nucleotide sequence

Length: 1,164

>Phmamm.CG.MTP2014.S269.g06421.01.t
ATGGACGATGTACCTGGACTGGTTGTTGACAATGGATCGGGAATGTGCAAAGCTGGTTTT
GCTGGAGATGATGCACCTAGAGCTGTGTTTCCCGCAATTGTTGGACGTCCAAGACATCAG
GGTGTGATGGTTGGAATGGGCCAGAAGGACAGTTACGTTGGAGATGAAGCTCAGAGCAAG
CGTGGTATTCTTACCCTTGCATACCCTATTGAGCACGGAATTGTTACGAACTGGGATAAC
ATGGAAAAGATCTGGCATCACACATTTTACAATGAACTACGTGTTGCCCCGGAAGAGCAT
CCAACCTTGCTTACAGAAGCCCCGTTGAATCCAAAAGCAAACCGAGAGAAAATGACCCAA
ATTATGTTCGAGACATTTAACACACCTGCAATGTACGTTGCCATTCAAGCTGTTCTCTCT
CTTTATGCCTCCGGCCGAACCACAGGATACGCGCTCCCGCACGCCATCATCCGGTTAGAT
TTAGCTGGTCGCGATTTGACTGATTATCTCATGAAGATTCTAACCGAGAGAGGATACTCG
TTTACGACAACAGCTGAACGTGAAATCGTGAGAGACATCAAGGAAAAACTGTGCTACGTT
GCCCTTGACTTTGAGCAGGAAATGCAAACTGCTGCCTCTAGTAGCTCTCTTGAGAAAAGC
TATGAGCTTCCCGACGGTCAGGTTATCACAATAGGAAACGAAAGATTTCGATGTCCCGAA
ACCCTATTTCAGCCAGCTTTCATCGGTATGGAATCTGCAGGTGTCCACGAAACTACCTAC
AATTCCATCATGAAGTGTGATGTTGACATCAGAAAAGATTTGTACGCCAACGGGGGGGGG
GACCGAAAAAAATCTAGTTGTCCAAGTCTTCTCCTGAACGCAAATACTTCGTATGGATTG
GAGGACCTATTCTCGCATCCCTCTCCACCTTCCAACAGATGTGGATCTCAAATCAAGAGT
ATAGCTGATCGTATACAAAAAGAGATTTCTGCTCTTGCTCCACCAACCATGAAGATCAAG
ATCATTGCTCCTCCTGAGCGCAAATACTCTGTATGGATTGGAGGATCCATTCTCGCATCC
CTCTCCACCTTCCAACAGATGTGGATCTCAAAACAGGAGTACGACGAATCTGGACCAAGC
ATTGTGCATCGCAAGTGCTTCTAG

InterProScan

Pfam
Actin (IPR004000) - T[2-277] 1.3E-87 - T[316-387] 6.3E-29
PANTHER
Actin (IPR004000) - T[2-277] 8.8E-227 - T[320-386] 8.8E-227
SMART
Actin (IPR004000) - T[4-387] 6.8E-188
PRINTS
Actin (IPR004000) - T[25-34] 1.9E-35 - T[48-59] 1.9E-35 - T[60-82] 1.9E-35 - T[114-127] 1.9E-35 - T[139-158] 1.9E-35
ProSitePatterns
Actin_CS (IPR004001) - T[52-62] . - T[368-376] .
ProSitePatterns
Actin/actin-like_CS (IPR020902) - T[103-115] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ACTG_HUMAN 80.446 % 660 0
ACTB_HUMAN 81.188 % 664 0
ACTA_HUMAN 79.95 % 654 0