Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S26.g01051.02.t

Possible name(s)

KDSR; RDH8; SDR16C5

Gene model

Phmamm.CG.MTP2014.S26.g01051

Location

S26 [139,329 / 142,405]

Sequences

Amino acid sequence

Length: 379

>Phmamm.CG.MTP2014.S26.g01051.02.p
MLILILFPVVIIVLLFIVSSRPSRLNVAGSHILITGGSSGIGLEIAKEFARKGGFITLVA
RNEQKLLEAKSIVEQHMKGGGERQCVTILPLDVASSAKEVLDGIKSTEERLGPVDYLINC
AGISFAGTFEDTPTEQFELLMKVNYFGSIYCTKAVLPGMKKRKKGVELYLSALKQDKLVC
LDIQLIVLPSLLFVALQKLYKWSSQAGQTGVFGYTAYCPTKFALRGFAETLQMEKLNLCV
LSKVKPYNIAVTVSFPPDTDTPGFHDDDDRKPEETQLISETSGFFMPDAVGKAIFRDAVR
GEFSSTIGLDGFILGQVTAGMSPCNSMLTAFCQIALMGPFRMVSLAYLKYFDGIVSKCAR
KRECAVQEEDKDKEASDAS

Nucleotide sequence

Length: 1,140

>Phmamm.CG.MTP2014.S26.g01051.02.t
ATGCTGATTCTTATACTTTTTCCCGTTGTGATTATTGTACTGCTTTTCATTGTCTCTTCA
CGTCCAAGTCGTTTGAATGTTGCCGGATCGCATATTTTGATCACTGGTGGGTCATCTGGC
ATTGGCCTCGAAATAGCCAAAGAGTTTGCAAGGAAAGGAGGGTTTATCACTTTGGTTGCT
CGCAATGAACAAAAGCTTCTGGAAGCTAAAAGCATTGTTGAACAACACATGAAAGGTGGA
GGAGAACGACAATGTGTAACTATTCTTCCTCTTGATGTAGCTTCATCAGCTAAAGAGGTT
CTGGATGGAATCAAATCAACAGAGGAGCGTTTGGGTCCAGTTGACTACCTTATTAACTGT
GCAGGCATCTCATTTGCTGGAACTTTTGAAGATACGCCAACTGAACAGTTTGAACTCTTA
ATGAAAGTCAACTATTTTGGTTCTATTTATTGCACAAAAGCTGTTTTGCCTGGAATGAAA
AAGAGGAAGAAAGGTGTCGAATTGTATTTGTCAGCTCTCAAGCAGGACAAACTGGTGTGT
TTGGATATACAGCTTATTGTCCTACCAAGTTTGCTCTTCGTGGCTTTGCAGAAACTTTAC
AAATGGAGCTCTCAAGCAGGGCAAACTGGTGTGTTTGGATATACAGCTTATTGTCCTACC
AAGTTTGCTCTTCGTGGCTTTGCAGAAACTTTACAAATGGAGAAACTAAATTTGTGTGTT
CTTTCAAAGGTGAAACCATACAATATTGCAGTTACTGTATCCTTTCCCCCTGATACAGAC
ACACCAGGATTTCATGATGATGATGATAGAAAACCAGAGGAAACACAGCTGATTTCTGAG
ACTTCTGGCTTCTTTATGCCTGATGCTGTTGGCAAAGCTATTTTTAGGGATGCTGTGCGG
GGAGAATTCAGCTCCACAATTGGTTTGGATGGATTCATTTTAGGGCAAGTAACTGCTGGA
ATGTCGCCATGTAATTCCATGCTGACAGCGTTCTGTCAAATCGCATTGATGGGTCCTTTC
CGCATGGTGTCGCTTGCTTATCTCAAGTATTTCGACGGTATCGTGTCGAAATGTGCTCGG
AAAAGAGAATGTGCTGTACAAGAAGAGGACAAGGATAAAGAGGCTAGTGATGCTTCTTAA

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[23-274] 2.13E-41
Pfam	SDR_fam (IPR002347) - T[31-165] 1.2E-28 - T[203-266] 1.0E-5
PRINTS	SDR_fam (IPR002347) - T[31-48] 2.5E-10 - T[112-123] 2.5E-10 - T[217-236] 2.5E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDHE2_HUMAN	30.769 %	79.3	1.48E-16
KDSR_HUMAN	44.068 %	296	6.67E-99