- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S26.g01068.01.t
Possible name(s)
HMCN1; SPON1; SPON2
Gene model
Location
S26 [259,956 / 273,799]
Amino acid sequence
Length: 951
>Phmamm.CG.MTP2014.S26.g01068.01.p
MQSFGTTVFLLLAVTGSHGGRFLSDKHYRLDCNGSPPQRYFSTPRSGDNGFHLRIEGAPE
FYEPEREYVVTLQSTLPSSFRGFAIRSTSSEDSSLSAGYFTPVNPFTTRTLDSCNHVTTH
VSNGKKTRVSTRWRAPSSGYGCVTISATVIQKGSIWFQNTGRLSLEICEAVKTTSPTSGN
PECCACGSATYRMTFYGLWSPQTHPKDYPEYSTHWSNVVGASHSLRYSIWDYGELSSPAV
QKVAEWGWPNDVETEVRSQGDDVMSVIKTKAQWPAYEPRNIRSPPSDTFTVDRKHPLVSL
LTMLGPSPDWNVGITKESMCTVECGWAGQRTYNLTPWDAGTDNGVSYMSPNSPTVPHESI
RPLTTSDHPESPFYNPNGGPIRPVAKVVINRISLEGESCGQNEELPIDSDFDVTVASSSE
SNDVQPCMYSPWGDWSNCGVTCGWGIKTRSRMVKAQTGATACEATMAKEICKGSGTCENS
NEVTVCIYSDWATWSSCGVTCGNATQFRSRVLQWPSEERYCHEPLKEMTSCALEQCPTQQ
DCQYSPWSRWMPCSVTCGFGQTLRKRFIVSHVGDESHCTKPLMQNSECLRSMTCEERSEP
DSSDCTYSPWTDWSACPVTCGVGQASRKRMLVSSSNTTTSCRDFEMENSKCMTSASCLDE
DEQLSAPTCSYSDWSEWMPCTVSCGTGATLRKKFLLGSNANGICDGILMEQTLCYKAPCD
VSTTSECVYASWSPWMPCSVTCGKGETLRKRFLNGDANPESCEAFQMETNICMMTCAVDT
PSPCEYADWSPWMPCNAPCGQSGETLRKKMLTSASTECDAVVMETKSCVSPPCPEAQCVL
QAWQPWSRCSTTCGSRGTKTRLRFPANGTAMVNCDATKLSEKARCRNPRCGRACVLSEWG
SWTVCGVTCKAGKLYGYQIRRRRVLTRPRGRGRRCGPRKEKKKCLCPTIAT
Nucleotide sequence
Length: 6,303
>Phmamm.CG.MTP2014.S26.g01068.01.t
AATTATAAAATATTATTCCATCTCCATGGCTTAATATATATAGATCAGTGGTACTCAAAC
TTTTTTATTGTTGGGGCCAAATGGCAGTTTTTTAAGTGTAGGGAACCGCAAAAAAACGAA
ACCTTGAGAAAATCAATAAAGATTATTACTTTGAAAGCTAAAATAGCAATGTTTGGTGGT
TTTCTGAGGTCTGGTGCAAGCCGCAATATAAGTAGTTGGGAGCCGCATGCGGCCCCGAAA
ACCGAGTTTGAGAACCACTGATATAGATTAAACAAGCTGTCTGCAGATGTACAAATAAAC
TAAAAAACTTACAATATTAAATGTATCATTCCCATCATGAAACTTGGAATAACCAAATCA
TCGCTGCCAGTCTCCCACCTTCTTTTGAAAGCAACCAAACCTGGCATATTTGTCTTTTGT
GTTCCTCCTCTTTAAAATGTGTTAGCAGTACAGTGGTAAATGAGGTCTGGGTGGACTTCA
AGTATTTTAGCATAAATTATCTGCATCATGTAATGCACAAATCTGCACTGGCCAGGTGGG
CCACAATGCACAGCAAGCACTGCAAAAGTGAAGAGCCTAAAAATGTGATCCTGGCAGCTG
TAGCTGATTGCCGAAAACAAACCCAAATGGTAAAATCTTTTTTCAATTTGTAAACAGGTT
TGGCAAATAGCGCTTTACTTGCTAAATTACTGATCTAAATAAAGGCAAACTATAAAGTTT
AATTTAATATCTGTCACGTTTAATTTAATATCTGTGCACTTTAAAAGGCAATGGGAACAT
CACAAAAACAACATCCAAACCCAAAGGAACAAAACAACAAAAGCCGATTTCGTCGCTTCA
CTCGATACATACGCTTTGCGATTACGACACGCATGATTGCATTTACGGAGAGATGATGTT
GCCACAATTTTGGTTCGAAAAAGGCTTGCTGAAAAACCACACCGCCTTGAAAGGCATCTC
TGAAGCATTCCCAAGTCAATTACAGACCATGAGATAAAGATAAAGTAACTGCTTCAAAAC
AGGGTTGTGTAAGTGTCCAAAAACTCACATAAACGTTGGTTCGGCTTTGGGCTAGTTTCA
AAATTCATCAACTACAGTTCTATAAAAACTCAAGTAGCAACATATCGCCTGTATTGATCG
CTCAAGTGGCGATTGATGATACAAGCACGTGCGTTACCATAACTGCTTATTATCAGAGCA
CTGACAACAAAATACCTAGTCTTTACGTTTTGCTTAGAAAGTATGGGAAGCGGTTGGTCA
AACGCGAATAAAGCCGAAACTGGAGAAACATGCAAATCTTCGGACATCAAAAACAAAGGT
GAGATATTTTACAGTCCTGGAGCCCACTATAACAACCAGGCTATATTACGTTTTCCACAA
GAAGCGAAAAGTGTTTTCATTGTTTGTAGGCCTATGCTGTAAAATGTTACGCTTTGATGG
TTAACCAAGGCAAACAAAAATATAAATGACTGCACCTAAAAAAGAATTTTCAACTCCCAG
ATAACACGTAGTATGACAGGCCCTGCAACTAAACTATTCTTTCGACATGGCAAAGTTTTG
CGAACGATTTGTTTTGCAATTGTCACCCGCATTGTAGCCTATATCTGGTTACCGGTATAT
AGGAACACGTTCTTAAACAACAATCGCATTTCGGCCTTAAACACACTTTATATCTCAGAC
TCTTTGGAAGTTAGAGAGCAACGCCGGGAAGGCCAAAACCCTTGCAAAAGTAAAAATGAT
TCCGCGGCATCAATGATTCCACTAACGTCACCAAGTTTAGCAAATCTCAAAGAGCTTTCG
ACATCGATCTGCAGTGAAAGTAATTTTGCTGATGATGAGGGTTTTGATGCTAACATAGCC
CCTCGGCTTTGGATGACATCACCAGATCGTGTTTTAAGTAGTGGCGGTTATCCATCGTTT
GTGACGTCTGCAACCTCGTTCACGTCGTTGGATCCAAATACGGTATAAGTTATTTGCACA
AATTTGGCATATCTTTGAAAGTGGCATGTTGTTTAAGGTGGAACATCAACCAAAAAGACC
AATGTCTCCACAAAATAGACAACAAACAACTAAACTAAGGTAAGTCTTCGTTCTGTACAA
TATTATTGACAATCATATGGAACTACATAAACTTTTTTAGAGGAAGACCTCATTCAGCGA
GACTCACAATTTTGCGGACTCTCATGGAATACAGCGATCGGCCAATGACTGCCCCAGATA
TTTTGCAATCCCTTCCAAATGTTAACAACAGAAGTCGAGGAACTCCAATAAGTTTTGTTC
AATCGACAATCCATTCGGAGTTGGAAGTAAATAGTACAGGAGAGATTCAGGGGTCTCAAA
CAGATTTTGGTACAGAAACAGTGGTATTAGGTGACATTGAAGTTCAATCTAGACCAGAAT
CCAAGGACACACCAGTAAAGAAAGTTATCACTGAAATTACATCACATAAGGTACTTATAT
GGGTCTGTAATATTATCTTGCTATACGCAAAAATATCCACTGCGCACAAAATTACATATT
TACAGATCAAACTTTCACAAGTAATCGATGCAAAAAGTTCAAAACGGAAACAGTGTAAAC
GACAGAAGAGAATACGATGTGAAAAATTTGGACTTTTAAAGCCATTAAACTACCATCCGA
AAGTAAAAAAGAAAACGCTTCGTACCCCAATGGTAATCAATACAAATGCGTTTTTTTAGA
TTTAACAATAACTACATTAACGTTGGCAGAGAAAAAGTTTGCTACCGTTACCTCCTCCGA
TGCCCATAAAATGTAAGTCACCTACTTTAGTACGCCGGAACACAAATGTCTGTAAACGTA
CAAAGGTTTTCAGTAATGAGGCCATAAGTCCAAAAATTTCAAGTCAACAATCAGGATACA
ATGCAAATGGAAACGCAAACTACAGTATGTAGAAACACGTCTTACGTTTCCGTCTGTTTT
TGATTATGACTATAGTTTAGCATTTTGTTGTTCAGTACGTTGGTTTTCTGGGCAAAGCAA
TCTACCACAGAGCCTTGCTGGAAGTCCATACGCTTCATCTACATTTAACATTAAGCACCA
ATTGCGTCCTTTGCACCACGGTTACAAAGTGATGACGCAGCGCCAAGTTCATGATGTTGT
TGACCGTTTGTATTCTGTGAAACCCGTTTATCGACAAAGTTCTTTAAAAAACACCTATCC
TAGAAGGTAAATCATATATTTTGGTGGACGAAGGCAGACTGATTAGGAGTGCTTCTGAGA
TGATTAACCGTCTTTCTTGGGCCGCAAATCCCCGTCAAGGGACGTAAATACAGCCCTCCA
CACAAGCAAGCCTTTGGGAATAGGACTTTGGTGGTCATGCAGTCGTTTGGTACTACGGTG
TTTCTGCTACTGGCTGTTACTGGATCCCATGGTGGTCGTTTTCTGTCAGACAAACATTAT
CGCCTGGACTGTAATGGAAGTCCCCCGCAGCGTTACTTTTCCACTCCTCGCAGCGGGGAC
AACGGGTTCCACTTACGGATAGAGGGTGCCCCCGAGTTCTATGAGCCTGAGAGGGAATAT
GTCGTGACCTTACAAAGCACACTGCCAAGCAGTTTTCGTGGGTTTGCTATTAGATCAACA
AGCAGTGAAGATTCGTCCCTATCCGCAGGATATTTTACGCCCGTGAACCCTTTTACAACC
CGTACACTCGATTCGTGTAATCATGTAACCACACACGTCAGCAATGGCAAAAAGACGCGG
GTTTCGACCAGGTGGCGGGCTCCATCTAGTGGATATGGCTGCGTTACGATTTCAGCTACT
GTGATTCAAAAAGGCTCAATTTGGTTTCAAAATACCGGCCGTTTATCATTGGAAATATGT
GAGGCAGTGAAGACAACGTCACCGACCAGCGGTAACCCGGAATGCTGTGCATGTGGTAGC
GCTACTTATCGAATGACGTTTTATGGTCTGTGGTCGCCTCAAACGCACCCGAAAGACTAT
CCTGAATATTCTACACATTGGTCCAACGTTGTTGGGGCATCGCACAGCTTACGCTATTCA
ATATGGGATTACGGGGAGCTGTCCAGTCCTGCCGTACAGAAAGTCGCGGAATGGGGTTGG
CCAAATGACGTCGAAACGGAAGTGAGGTCACAGGGTGATGATGTAATGTCGGTAATAAAA
ACCAAAGCCCAGTGGCCGGCATACGAACCCAGAAACATACGTTCTCCACCATCAGACACG
TTTACAGTTGATCGCAAGCATCCATTGGTATCCCTTCTCACCATGTTAGGCCCGAGTCCC
GACTGGAACGTTGGCATCACTAAAGAATCAATGTGCACTGTAGAGTGTGGGTGGGCAGGC
CAAAGAACATATAATTTAACGCCATGGGATGCTGGAACTGACAATGGTGTCAGCTATATG
TCACCCAACTCCCCAACTGTCCCACACGAAAGCATTCGTCCCCTCACCACCTCTGACCAC
CCCGAGTCGCCATTCTACAATCCGAATGGTGGTCCCATTCGACCCGTTGCAAAAGTTGTA
ATTAACAGAATTTCCCTAGAGGGTGAATCTTGCGGACAAAACGAAGAACTTCCGATTGAC
AGTGATTTTGATGTCACAGTTGCGTCGAGTTCCGAATCTAACGATGTCCAACCGTGCATG
TACAGCCCATGGGGTGACTGGTCTAACTGTGGGGTTACATGTGGCTGGGGAATAAAAACT
CGAAGCAGAATGGTGAAGGCACAAACTGGTGCAACTGCGTGCGAGGCTACTATGGCCAAG
GAGATATGCAAAGGCAGCGGTACATGTGAAAACAGCAACGAAGTAACCGTATGCATATAT
TCAGACTGGGCCACTTGGTCGAGCTGTGGAGTCACGTGTGGTAACGCTACGCAATTCAGG
TCACGTGTTTTGCAGTGGCCATCCGAAGAAAGATATTGTCACGAACCACTAAAAGAAATG
ACATCGTGTGCACTTGAACAATGTCCAACTCAACAAGACTGCCAGTATTCTCCATGGAGT
AGGTGGATGCCTTGTTCAGTTACTTGTGGTTTCGGCCAAACGCTGCGCAAAAGGTTTATC
GTTTCCCATGTTGGTGACGAAAGCCACTGCACCAAACCACTCATGCAAAACAGCGAGTGC
CTCAGGTCGATGACGTGCGAAGAGAGATCAGAACCTGATTCGTCTGACTGTACATATTCC
CCTTGGACTGATTGGTCTGCTTGCCCAGTCACGTGCGGCGTCGGTCAAGCGTCAAGAAAG
CGAATGCTCGTCAGCTCAAGTAATACAACTACATCATGCCGAGACTTTGAAATGGAGAAC
TCAAAATGCATGACGTCGGCTTCATGCTTGGACGAAGATGAGCAATTGAGCGCACCGACA
TGCTCTTACTCTGATTGGTCGGAATGGATGCCTTGTACGGTGTCGTGTGGTACTGGCGCC
ACCTTACGGAAGAAGTTTTTGCTTGGTTCCAATGCTAATGGAATATGTGATGGTATTTTA
ATGGAGCAAACTTTGTGTTACAAAGCGCCGTGCGATGTTTCCACCACAAGTGAATGTGTC
TACGCGTCTTGGTCGCCGTGGATGCCATGTTCTGTTACCTGTGGCAAAGGCGAAACTTTA
AGAAAGCGATTCTTGAATGGAGATGCCAACCCCGAGAGTTGCGAAGCTTTTCAGATGGAA
ACAAATATTTGCATGATGACCTGTGCAGTAGACACGCCATCGCCTTGCGAGTACGCTGAT
TGGTCACCTTGGATGCCGTGCAACGCACCATGTGGCCAATCAGGAGAAACTCTTCGAAAA
AAGATGCTGACGTCAGCCTCGACTGAATGTGATGCGGTTGTTATGGAAACTAAATCTTGT
GTGTCTCCGCCCTGTCCTGAAGCGCAATGCGTGCTACAAGCATGGCAGCCGTGGAGTAGA
TGTTCGACCACTTGCGGCAGCAGAGGCACCAAAACCCGGTTACGATTTCCTGCCAATGGA
ACCGCGATGGTTAATTGCGATGCAACAAAATTATCGGAAAAAGCAAGATGCCGCAATCCA
CGTTGTGGGCGAGCTTGTGTGTTAAGTGAATGGGGGTCATGGACGGTATGTGGCGTTACG
TGCAAAGCAGGAAAACTTTACGGATACCAGATTCGGCGCCGAAGAGTTTTGACCCGACCC
CGCGGAAGAGGCCGAAGATGCGGTCCTAGAAAGGAGAAGAAGAAATGCTTGTGTCCCACT
ATTGCCACATGAACGGGACTTATGCCATTAAACTGATGCTTGTAAAATAGAGAAAGCGTG
CCGGGTTGGATAGAGATGCGTGAAAACACAAGTACTTGTGTTTCCTTTTATATGAGGCCC
GAT
| ProSiteProfiles |
Reeler_dom (IPR002861) - T[17-181] 27.499 |
| CDD |
Reeler_dom (IPR002861) - T[43-168] 4.74494E-20 |
| Pfam |
Reeler_dom (IPR002861) - T[50-157] 1.5E-15 |
| Gene3D |
Spondin_N_sf (IPR038678) - T[171-366] 6.8E-66 |
| ProSiteProfiles |
Spondin_N (IPR009465) - T[179-372] 73.178 |
| Pfam |
Spondin_N (IPR009465) - T[189-383] 3.9E-67 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[424-477] 4.8E-9 - T[483-537] 2.6E-11 - T[538-589] 1.4E-10 - T[601-652] 4.1E-9 - T[667-719] 6.7E-10 - T[724-776] 1.2E-9 - T[781-834] 3.3E-6 - T[835-890] 5.8E-8 - T[891-945] 4.6E-9 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[426-471] 9.94E-9 - T[486-536] 9.02E-9 - T[539-589] 1.31E-8 - T[604-652] 1.19E-7 - T[668-719] 6.41E-8 - T[726-773] 7.59E-8 - T[781-833] 9.55E-6 - T[837-890] 2.22E-6 - T[894-944] 2.88E-5 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[426-478] 9.502 - T[485-537] 10.961 - T[541-834] 10.781 - T[837-891] 9.138 - T[893-947] 9.682 |
| SMART |
TSP1_rpt (IPR000884) - T[429-478] 7.0E-6 - T[488-537] 1.8E-5 - T[544-595] 5.2E-4 - T[607-658] 7.3E-6 - T[671-720] 9.3E-5 - T[729-777] 1.0E-7 - T[786-834] 0.026 - T[840-891] 0.0027 - T[896-947] 0.073 |
| Pfam |
TSP1_rpt (IPR000884) - T[430-473] 3.0E-9 - T[489-536] 1.6E-6 - T[545-594] 7.9E-9 - T[608-657] 1.4E-8 - T[672-719] 1.8E-7 - T[731-775] 5.9E-12 - T[788-833] 3.2E-7 - T[842-890] 0.0018 - T[897-944] 0.016 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 29.155 % | 94.4 | 2.32E-19 |
| SPON1_HUMAN | 41.441 % | 516 | 4.39E-170 |
| SPON2_HUMAN | 32.517 % | 139 | 5.88E-36 |