- Clone 'cima8107735' >
- Clone 'cijv031b03' >
- Transcript 'Harore.CG.MTP2014.S9...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S270.g06450.01.t
Possible name(s)
MECOM; PLAG1; ZNF418
Gene model
Location
S270 [45,096 / 52,193]
Amino acid sequence
Length: 1,153
>Phmamm.CG.MTP2014.S270.g06450.01.p
MISSLRHDISAKNKLDVKMNLGDPNPLTYYPTEQYQSSPYRHAYSSTGGPPPSMPNINQS
NGQPQYPNSGAYYQNQVYSQPPLPPMNHVRPPISAQDHNTMTPQRPLYPATSQYPNPSEV
QLRRETPYQVQNEQPAMHYQATQNTNNNHMLNQAPHPPFNSPKMASALPPGSMVGGHCIN
GPWPNNNQYGTSFPTSGMNSLQSPSSFSENQNTSSSAEGDSSVSQPTPNKRSYPCPKCSK
VFKRGDHLKRHLLSVHDREHPYQCGECSKGFASVNTLTRHCQASHPGISTKGHLCVRCEL
RYRSITELEGHAVSLHLAQDAEYMKNINKSSKTFQCEICHKTVSSEKNLKRHIKKLHGEN
AKNILSCAICEQSFISNESLKEHMCRAHASSSVTPAIENSTPVMTEPTVIQSPMVNKTNM
PLDHERQFATKPNAVPTSIQRMSKEMPQQHLVDQKPMNLPQPVYQQPDRNSMKTMLECAT
DPYQQPASDAGQVASNAPLPVTSVNSYLSSDTHANSVSYTAKLQAPITKSEEQEISSVSE
AFSMAMKTLSEFSYDDLSYNSSEYVPTSLSVFQSNLPMPNFHYPSAVQLNQTNPGPKNMA
TPPSSQSMFVAGPAVPFSEISSTQLKQDSQGVGQPLAVDINATSLHQDEAGATHLQYPLP
DGSVANAAALARRGRPKKKKSALVNGESDELSTNGMIVKTDASNNSGKFTCTVCHEIYEG
IDNLMQHVESIHLSANPHECCICNKRFAQAGNVKRHIRFVHLRERPFQCRDCDSTFDRLC
YLQRHMRSHVDSKVQTSDTSHLNPCNCPECGKKCLTAHHLRGHMQRKHFAKNNEQSEKLV
RKYSHLFERPDGFNKSNLDAKPYNEFGQSISPKNRRKRFTKNKMDNGAQQIPVPYTNCHG
MYSVHPTSMADYGANATTSTLHDTNFNGNLPSGSISTYSTYQEAGPNSNATLFEQNLSTG
NNKQQKSHLEKLLSETSTDNSNFIVSDKRKSLGRLSDENTKAPNSRKSYKLYNISCNFSK
LKQRLLRYKCQHCPGRQFSSLGLLKSHIAIVHHSTTRRHLCLLCGHSFSSNLLLMAHVSK
RHTNRPKRLMASRKKRAKRMSFENSPHGSGIINSKELPDQCSPDIQQMFNKEQTFQSNMH
SVVNLPTHSLVPT
Nucleotide sequence
Length: 3,462
>Phmamm.CG.MTP2014.S270.g06450.01.t
ATGATATCCTCTTTGAGGCATGACATCAGTGCAAAAAACAAACTAGATGTCAAAATGAAT
CTTGGTGACCCAAATCCTTTAACCTATTATCCAACAGAACAATACCAATCCAGTCCTTAC
AGACATGCCTATTCATCTACCGGAGGACCACCACCCTCAATGCCTAACATCAATCAATCA
AATGGTCAACCCCAGTATCCTAATAGTGGTGCTTATTACCAAAACCAGGTGTATTCACAG
CCACCTTTGCCACCTATGAATCATGTAAGGCCTCCTATTAGTGCCCAAGACCACAACACG
ATGACTCCACAGCGCCCACTTTACCCTGCAACATCGCAATATCCTAATCCAAGTGAAGTC
CAACTGCGACGAGAAACACCCTATCAAGTGCAAAATGAACAACCAGCAATGCATTATCAA
GCAACACAAAATACAAACAATAACCACATGTTAAACCAAGCTCCCCATCCTCCATTTAAC
TCACCAAAAATGGCTTCCGCATTACCACCTGGTTCGATGGTCGGTGGGCATTGTATTAAT
GGACCATGGCCAAATAATAATCAGTATGGGACATCGTTTCCAACGAGTGGTATGAATTCA
CTGCAATCTCCAAGTTCATTCAGTGAAAATCAGAATACTTCGAGTAGTGCAGAGGGGGAT
AGCAGTGTGTCACAGCCAACACCCAACAAGAGATCATATCCATGTCCGAAGTGTTCAAAG
GTTTTCAAAAGAGGAGATCACTTGAAGAGGCATCTTCTGTCTGTCCATGATCGTGAACAC
CCGTATCAGTGTGGAGAGTGCTCCAAGGGATTCGCTTCAGTAAATACTTTGACACGTCAC
TGCCAAGCATCCCATCCAGGCATTTCCACCAAGGGCCACTTGTGTGTAAGATGTGAACTA
AGATACAGAAGCATTACTGAACTTGAAGGCCATGCAGTGTCTCTTCATCTGGCACAAGAT
GCAGAATACATGAAAAATATCAATAAGAGCAGCAAAACATTTCAATGTGAAATTTGTCAC
AAGACTGTATCTTCTGAAAAGAATCTCAAGCGACACATCAAAAAACTTCACGGAGAAAAT
GCAAAGAATATTTTGAGTTGTGCCATCTGTGAGCAATCCTTTATTTCAAATGAAAGCCTG
AAAGAGCATATGTGTCGGGCCCATGCTTCAAGTTCTGTAACCCCAGCCATCGAAAACAGT
ACACCAGTGATGACAGAGCCTACAGTTATTCAATCACCAATGGTCAACAAAACCAACATG
CCACTTGACCATGAAAGACAGTTTGCAACAAAACCCAATGCTGTACCAACAAGTATTCAG
AGAATGTCAAAAGAAATGCCACAACAGCATTTAGTTGACCAAAAGCCCATGAATTTGCCA
CAGCCGGTTTACCAACAACCAGACCGTAACAGTATGAAGACAATGCTTGAATGTGCAACT
GATCCTTATCAACAGCCTGCTTCCGATGCGGGGCAAGTTGCTTCCAATGCCCCATTGCCA
GTCACATCAGTTAACAGTTATTTGTCATCTGACACTCATGCAAATAGTGTTTCCTACACT
GCAAAGCTTCAGGCTCCAATTACCAAATCGGAAGAGCAGGAAATTAGTTCTGTGTCTGAA
GCATTTTCAATGGCCATGAAAACCTTGTCAGAGTTTTCATATGATGATCTGTCATATAAT
TCAAGTGAATATGTACCAACCAGCTTGTCAGTGTTTCAGTCCAATCTTCCGATGCCAAAT
TTTCACTATCCTAGTGCTGTGCAGCTTAACCAAACTAACCCTGGACCAAAAAACATGGCA
ACTCCACCAAGCAGCCAATCAATGTTTGTTGCCGGGCCTGCAGTACCATTTTCTGAAATC
TCCTCAACCCAGCTAAAACAAGACTCCCAAGGTGTGGGGCAACCTTTGGCAGTGGATATA
AATGCAACATCTCTGCATCAAGATGAAGCTGGTGCCACACATTTACAGTATCCACTTCCT
GATGGAAGTGTTGCCAATGCAGCAGCCTTGGCTCGACGGGGTAGGCCAAAGAAAAAGAAA
AGTGCATTAGTCAATGGTGAAAGTGATGAGTTGTCTACAAATGGAATGATTGTCAAGACT
GATGCATCGAATAATAGTGGAAAATTCACCTGCACAGTGTGTCATGAAATATATGAAGGA
ATTGACAATCTTATGCAGCATGTGGAGTCTATTCATCTAAGTGCAAATCCTCATGAATGT
TGCATCTGTAACAAGCGATTTGCCCAGGCTGGCAATGTAAAACGACACATTCGCTTTGTG
CATCTTCGCGAGAGACCATTTCAATGCAGAGACTGTGATTCCACTTTTGACAGATTGTGC
TACTTGCAACGTCACATGAGATCGCATGTTGATTCCAAGGTACAAACTTCAGACACTTCA
CATCTCAATCCTTGCAATTGCCCAGAATGTGGCAAGAAATGTCTCACTGCCCATCATCTG
CGCGGCCACATGCAGAGGAAGCACTTCGCTAAAAATAACGAACAGTCTGAAAAGCTTGTC
CGCAAGTATAGTCACCTTTTTGAAAGACCCGATGGCTTTAACAAAAGCAATCTTGATGCT
AAACCATATAATGAGTTTGGTCAATCAATATCCCCAAAGAATAGAAGAAAGAGGTTTACC
AAGAACAAAATGGACAATGGTGCTCAGCAAATTCCTGTACCGTACACAAATTGCCATGGC
ATGTACAGTGTTCATCCTACTAGCATGGCTGACTATGGAGCTAATGCCACTACCTCAACT
CTGCATGACACAAATTTCAATGGAAACTTGCCTTCTGGAAGTATCTCTACCTATTCGACA
TACCAAGAAGCTGGACCAAATTCCAATGCAACATTATTTGAACAGAACCTGTCAACTGGG
AATAATAAGCAACAAAAATCACATTTAGAGAAGCTTCTGAGTGAAACATCTACTGATAAC
AGCAACTTCATTGTAAGCGACAAAAGGAAATCACTTGGAAGACTTTCGGATGAAAACACA
AAGGCTCCAAACTCCAGAAAATCTTACAAACTGTATAACATAAGCTGCAACTTTAGTAAG
CTTAAACAGCGGTTGCTTCGTTACAAATGCCAGCATTGCCCTGGACGACAGTTTTCCAGC
CTGGGCCTGTTGAAAAGTCACATTGCAATTGTGCATCATAGCACGACACGACGTCATCTT
TGCCTTCTTTGTGGTCACAGTTTTTCATCCAACCTCTTGCTGATGGCCCATGTCAGCAAA
CGTCACACAAACAGACCAAAGCGTCTAATGGCATCAAGGAAAAAGCGTGCAAAGAGAATG
TCTTTTGAAAACTCGCCACATGGAAGTGGGATAATAAACAGCAAAGAATTGCCAGATCAG
TGTAGCCCTGACATACAGCAGATGTTTAACAAGGAGCAAACCTTCCAATCCAACATGCAC
TCGGTTGTGAATTTGCCCACACATTCGTTAGTACCTACCTAA
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[229-280] 5.95E-11 - T[332-385] 2.47E-6 - T[708-747] 9.76E-5 - T[737-789] 2.44E-11 |
| Pfam |
Znf_C2H2_type (IPR013087) - T[233-256] 1.1E-4 - T[334-357] 7.1E-4 - T[366-388] 0.011 - T[738-761] 0.012 - T[767-789] 0.0067 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[233-261] 13.277 - T[262-290] 11.448 - T[334-362] 10.221 - T[365-393] 8.995 - T[709-737] 9.785 - T[738-766] 13.256 - T[767-794] 11.572 - T[1059-1087] 9.141 |
| SMART |
Znf_C2H2_type (IPR013087) - T[233-256] 3.9E-4 - T[262-285] 0.0041 - T[293-316] 26.0 - T[334-357] 0.0018 - T[365-388] 0.36 - T[709-732] 0.19 - T[738-761] 0.011 - T[767-789] 0.0052 - T[805-828] 0.65 - T[1028-1052] 0.065 - T[1059-1082] 3.8 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[235-256] . - T[264-285] . - T[295-316] . - T[336-357] . - T[367-388] . - T[711-732] . - T[740-761] . - T[769-789] . - T[805-828] . - T[1061-1082] . |
| Protein Name | Identity | Bit Score | e-value |
|---|