- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C8.308.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S277.g06568.02.t
Possible name(s)
STRN; STRN3; STRN4
Gene model
Location
S277 [59,471 / 71,322]
Amino acid sequence
Length: 689
>Phmamm.CG.MTP2014.S277.g06568.02.p
MPGILHFIQHEWSRFEMERAQWDVERAELQARIAFLQGERKGQENLKRDLIRRIKMLEFA
LKQERAKVHKLRFGNEMSMDQIINDANDDSKTTEIPTANANMSWRHGRQLLRQYLQEVGY
SDTILDVRSQRVKALLGNNYDMNKPVENDNKMVNGDMSDEEKAKNKSGSFNIPIVNDQAD
SEVLHDFDFLNTADNDDDDVQMQDEDVITSGDHQRKARANKDEVDGMSVETATAIAEFDF
LNPDAEEPDDTKATDWTIDPNKLNAMKQQFLLEKKQQKKKGMKRPAKKHLQDMLQTFQGA
EMQKTNDDIDIHIPEEENLPFTVGGGQTGDESIETALGLGALAGLTVANEADPLAYDMSA
TKETFRKTWSPKFTLRSHFDGIRAIRFLPTESAVLTASEDNTMKLWNLNKPLPNKKSQAL
DVEPIYSFRGHVGAVLCLDVSADGVFCFSGGIDSSVRCWALPNINIDAYDTYDSSLAGEI
LVGHTDAVWSLSYSNTRQQLLSASADNSIKLWRPTSNDPLVQTYTVDGPSTPTCVEFVQC
DSNHAVVSHTDGKVVLYDLETGKTPVILSENDTGRVNAVATHPTMPITMTAHDDRHIKFF
DNSSGKLIHSMVAHLDSVTSLSVDPNGLYLLSGSHDSSIRLWNLDSKTCIQELTSHRKKF
DESIYSVAFHPSATYIASAGADALAKVFV
Nucleotide sequence
Length: 2,070
>Phmamm.CG.MTP2014.S277.g06568.02.t
ATGCCAGGAATTCTCCACTTCATTCAGCATGAATGGTCGCGATTTGAGATGGAAAGAGCT
CAATGGGACGTAGAGCGAGCTGAACTGCAGGCTAGAATTGCTTTCCTGCAAGGAGAGAGA
AAGGGACAAGAAAATTTGAAACGAGATCTAATCAGAAGAATAAAGATGTTAGAATTTGCA
CTGAAACAAGAACGAGCCAAAGTCCACAAGTTGAGATTTGGAAATGAAATGAGCATGGAC
CAAATAATTAACGACGCTAATGATGACTCCAAAACCACTGAAATTCCAACTGCAAATGCC
AACATGTCATGGAGACATGGAAGACAATTGCTTCGTCAATATTTGCAGGAGGTTGGATAT
AGTGACACAATACTCGATGTGAGGTCACAAAGAGTGAAGGCTCTGCTTGGAAACAATTAT
GACATGAACAAACCAGTGGAAAACGACAACAAAATGGTGAATGGTGACATGTCAGATGAA
GAGAAAGCAAAAAACAAATCTGGAAGTTTCAATATCCCGATTGTCAACGACCAAGCAGAC
AGTGAAGTATTACATGACTTTGATTTCCTCAACACCGCTGATAATGATGATGATGACGTC
CAGATGCAGGACGAAGATGTCATTACATCCGGGGATCACCAGAGAAAAGCGAGAGCTAAC
AAGGATGAGGTGGATGGGATGAGTGTTGAAACTGCTACAGCCATCGCAGAGTTTGATTTC
TTGAACCCAGATGCTGAAGAACCAGACGATACTAAAGCCACTGATTGGACGATTGACCCG
AACAAACTGAATGCAATGAAACAACAATTTCTACTCGAAAAAAAGCAACAGAAAAAGAAA
GGAATGAAAAGACCAGCAAAGAAGCATTTGCAAGATATGCTTCAGACATTTCAAGGAGCC
GAGATGCAAAAAACAAATGATGACATTGATATCCATATACCCGAAGAAGAGAACCTCCCA
TTCACCGTCGGAGGGGGTCAGACCGGCGACGAATCAATCGAAACTGCACTTGGACTTGGA
GCTTTAGCCGGACTTACTGTGGCCAATGAAGCGGATCCACTTGCTTACGATATGTCAGCT
ACTAAGGAGACTTTCCGAAAAACCTGGAGCCCGAAATTCACGCTCCGGAGCCACTTTGAC
GGGATCCGGGCGATCCGGTTCCTTCCCACCGAGTCAGCGGTTCTAACTGCGTCCGAAGAC
AACACGATGAAATTGTGGAATTTAAACAAACCTCTTCCGAATAAGAAGAGTCAAGCTTTG
GATGTTGAGCCGATCTACAGTTTCCGTGGACACGTAGGAGCAGTTTTGTGTCTGGATGTG
AGCGCTGATGGGGTTTTCTGCTTCAGTGGAGGAATCGACTCATCTGTAAGATGTTGGGCT
CTTCCTAATATCAACATTGATGCGTACGACACATACGATTCTTCACTGGCCGGAGAGATA
TTGGTCGGACACACAGACGCTGTTTGGTCGCTCTCGTATTCCAACACTCGTCAACAGCTC
CTATCTGCTTCAGCTGATAATTCCATCAAATTATGGAGGCCGACTTCAAATGATCCGCTT
GTACAGACTTACACTGTTGACGGACCTTCAACGCCCACTTGTGTTGAGTTTGTACAATGT
GATTCCAACCACGCGGTGGTGTCCCATACCGACGGAAAAGTTGTCTTGTATGATCTCGAA
ACAGGGAAAACACCTGTTATTCTCTCTGAAAACGACACAGGTCGAGTAAATGCAGTCGCA
ACTCACCCAACCATGCCTATCACCATGACAGCACACGACGATCGTCACATCAAGTTCTTT
GACAATTCCTCAGGAAAGTTGATCCATTCTATGGTTGCCCATCTTGATTCGGTGACGAGT
CTCTCCGTTGATCCAAACGGTCTCTACCTTCTTTCAGGAAGTCACGATTCCTCAATTCGA
CTGTGGAATCTCGACAGCAAAACCTGCATACAAGAGTTGACGTCACATCGCAAGAAGTTC
GACGAATCAATTTATTCTGTTGCTTTTCATCCGAGCGCAACTTACATCGCAAGTGCAGGG
GCCGACGCCCTCGCTAAGGTCTTCGTATGA
| Pfam |
Striatin_N (IPR013258) - T[1-126] 7.6E-43 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[342-529] 1.6E-29 - T[530-688] 1.8E-36 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[367-688] 5.86E-65 |
| SMART |
WD40_repeat (IPR001680) - T[368-407] 2.9E-6 - T[421-460] 1.1E-6 - T[474-513] 4.5E-6 - T[517-558] 5.4 - T[562-601] 2.0 - T[604-643] 5.8E-10 - T[646-689] 1.6E-4 |
| Pfam |
WD40_repeat (IPR001680) - T[370-407] 0.0043 - T[423-459] 5.4E-5 - T[480-512] 7.8E-4 - T[605-643] 3.7E-8 - T[648-683] 0.0087 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[375-409] 13.349 - T[428-459] 10.208 - T[481-522] 14.017 - T[611-652] 16.423 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[375-689] 43.292 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[394-408] . - T[630-644] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[394-408] 1.6E-6 - T[500-514] 1.6E-6 - T[630-644] 1.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| STRN3_HUMAN | 50 % | 707 | 0 |
| STRN_HUMAN | 49.394 % | 678 | 0 |
| STRN4_HUMAN | 44.306 % | 576 | 0 |