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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S283.g06659.01.t

Possible name(s)

CLDN19; CLDN20; CLDN7

Location

S283 [66,766 / 68,116]

Sequences

Amino acid sequence

Length: 227

>Phmamm.CG.MTP2014.S283.g06659.01.p
MYGQIASLILAYISTGLCATTNFWSLWAISSPESAPVLGAVWAWRGIWADCMQIYGGQYH
CEEQYSLLMEDAYKVTIQALMCLATVLSASACFLMLVGMECTLLLEGKPESKRKIMFICA
ICFFVSGMFTLVSVSWYAAMIVEDFFSFENQDNLVRYELGPTIYLGFVCSFLCLVTALCI
CCMPGPRDEQYDYRKTSYTPAYVSSKPDKKSDERYRKPSKPSAMEYV

Nucleotide sequence

Length: 684

>Phmamm.CG.MTP2014.S283.g06659.01.t
ATGTACGGACAAATAGCTAGCCTGATTTTGGCGTATATTTCGACCGGCCTTTGCGCTACT
ACTAACTTTTGGAGCCTTTGGGCCATCAGTAGCCCGGAAAGTGCACCGGTTTTGGGAGCG
GTATGGGCCTGGAGAGGAATATGGGCGGATTGTATGCAAATTTATGGCGGACAATATCAC
TGCGAAGAACAGTATTCTTTACTAATGGAAGATGCATACAAAGTCACGATTCAAGCCTTG
ATGTGTTTGGCTACAGTTTTATCAGCGTCTGCCTGTTTTCTGATGCTTGTTGGCATGGAG
TGCACACTTTTGCTAGAAGGCAAACCCGAATCTAAACGCAAAATTATGTTCATCTGCGCA
ATTTGCTTTTTTGTATCAGGTATGTTTACCCTGGTTTCTGTGTCTTGGTATGCCGCAATG
ATCGTTGAAGATTTTTTCTCCTTTGAGAACCAAGACAATCTTGTACGATATGAGTTGGGA
CCAACCATATATCTTGGTTTCGTCTGCAGTTTTTTGTGCCTTGTCACGGCTCTATGCATT
TGCTGCATGCCTGGTCCACGAGACGAACAATACGATTACCGCAAGACATCGTATACCCCT
GCTTATGTCAGTTCAAAACCTGACAAAAAGTCCGACGAAAGATATAGGAAGCCGAGCAAA
CCTAGCGCCATGGAATATGTTTGA

InterProScan

PANTHER
Claudin (IPR006187) - T[1-202] 3.9E-74
Pfam
PMP22/EMP/MP20/Claudin (IPR004031) - T[9-175] 8.2E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CLD19_HUMAN 28.922 % 98.6 2.26E-25
CLD7_HUMAN 32.597 % 85.5 1.82E-20
CLD20_HUMAN 28.09 % 83.2 1.32E-19