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  1. Clone 'cima877243' > 
  2. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S28.g01139.01.t

Possible name(s)

CARMIL1; CARMIL2; CARMIL3

Gene model

Phmamm.CG.MTP2014.S28.g01139

Location

S28 [72,417 / 86,216]

Sequences

Amino acid sequence

Length: 883

>Phmamm.CG.MTP2014.S28.g01139.01.p
TFSAASNVPYDVAEGIRDVIGRKKVVTLKKMVKLERPQGDKVDAKVLVLTPYRCQILGVK
APFKMEADFHFLEIKSMDSPSPDRLVMSTHSSKIFFMQMIGTDDADHIIGRVALSLRTIF
PSVPLSRILKASLEPLHRQKVIQQMLNQADQSEPGPCGNFSEMYRCVCDFLSCPVREEVE
WDVDTIYLSQNCRELSLKDFDLPDARDIIPIVSVLNYNKWFEGLIVRNTKLHGEILDFVL
KAARNSQNMKTLVLEGVGLKGEFAQKLATNMVENKESRIETLDLSNNPLEDKGLIHLSGA
LPVIKHASLTDLNVARTGLTAKGVNGLCQALRSSANIMGSLTHLNLSGNCLKVDDSEGLY
NFLATENHLLELDLSATDSSVEMYISALSHGCLMHLQHVNLSKNHFLGKSSVGQRYPHFL
EEEYSKIRKQKDTSLPSSFQEFFQNTHALKSIDFSGIKFPNEGLKCIMDGLLVNLTKGLE
VSVNLSSCEIKQSGCQVIQSGIGTVRNLVGLDLSDNSMDNELPNFFGWLQQNKSLRELKI
GRNFSGIKQKNIRPVMDSIVELVQEENSVLESLSLADSKLREYTHVLLGCLGSNTSLTEL
DISGNQMGDTGARVLAKSVQINSKLKILKFDRNNLSAAGFHELAVAMGKNYTLRYMPYPV
NDCMGAMKQHPERTQTALAQIQDLLLRNANTNRASNDQQFRLQKVVTSTAQQVLDKVAEK
VDDVINALEIIDAESENASCVIVGKKLVRDAKNSKELLSDIYGLGMEKSAGPSSQLQCKI
SEMATNVDKMVQEHIKSTVDAMTKNAESQCPQIYEEIKSDLTESVAARQVLPAYSVRDHV
IQSSGTEIVNQVSELNLSIATLISDKVTDSLLAALSQCNLQLV

Nucleotide sequence

Length: 2,653

>Phmamm.CG.MTP2014.S28.g01139.01.t
CCACATTTTCTGCTGCAAGCAATGTCCCATATGATGTTGCAGAGGGTATCCGTGATGTTA
TTGGTCGCAAAAAGGTGGTCACATTGAAGAAGATGGTGAAATTAGAACGGCCTCAAGGGG
ACAAAGTGGATGCCAAAGTTCTTGTGCTAACTCCGTATCGATGCCAAATTCTTGGTGTCA
AGGCCCCATTTAAAATGGAAGCAGACTTCCACTTCCTTGAAATCAAATCCATGGATAGTC
CATCTCCTGACAGGCTTGTCATGTCAACTCACAGTTCAAAAATATTTTTCATGCAAATGA
TTGGGACTGACGATGCAGACCATATCATTGGGAGAGTAGCATTGTCACTTCGAACCATTT
TTCCAAGTGTTCCTCTGTCACGTATTCTGAAGGCTTCACTGGAACCACTACATCGTCAGA
AAGTCATTCAACAAATGCTAAACCAGGCTGACCAGTCAGAACCAGGCCCATGTGGCAATT
TTTCTGAGATGTATCGTTGTGTTTGTGATTTCCTTTCTTGTCCTGTTAGGGAGGAAGTGG
AATGGGATGTAGACACCATATACCTCTCTCAAAATTGCCGTGAGCTCAGTTTAAAGGATT
TTGACTTGCCAGATGCAAGAGATATCATTCCCATTGTATCTGTGCTCAATTACAACAAAT
GGTTTGAAGGACTCATTGTGAGAAATACCAAACTGCATGGAGAAATTCTTGATTTTGTGT
TAAAAGCTGCTCGGAATTCACAAAACATGAAGACCTTAGTGTTGGAGGGTGTAGGTCTGA
AAGGTGAATTTGCTCAGAAGTTGGCAACTAACATGGTTGAAAACAAGGAGAGCAGGATCG
AGACGTTGGATCTATCCAACAATCCTCTGGAGGACAAAGGACTGATCCACCTCAGTGGTG
CACTTCCTGTGATTAAACATGCCAGTTTAACAGACCTTAATGTAGCTCGCACAGGCCTTA
CTGCAAAAGGTGTAAATGGTTTATGCCAAGCACTCAGGTCAAGTGCAAATATTATGGGGA
GTTTAACTCATCTCAACTTGTCTGGAAACTGCCTAAAGGTTGATGATTCAGAGGGACTTT
ACAACTTTTTGGCCACCGAAAATCACCTTCTGGAGCTTGACCTTTCAGCCACCGACAGTT
CTGTGGAAATGTACATCAGTGCCCTTTCTCATGGTTGCCTTATGCACTTACAACATGTGA
ACCTCTCAAAGAACCACTTTCTTGGAAAGTCATCTGTTGGACAACGTTACCCACATTTCC
TTGAAGAGGAATATTCTAAAATAAGGAAACAAAAAGACACTTCACTCCCCTCATCATTTC
AGGAGTTCTTTCAAAACACCCATGCATTGAAGTCCATTGACTTTTCTGGCATCAAATTTC
CAAATGAAGGGCTAAAGTGCATTATGGATGGTTTGCTTGTCAATTTAACAAAAGGTCTTG
AAGTTTCAGTTAACTTATCAAGCTGTGAGATCAAGCAGTCTGGCTGTCAGGTGATCCAAT
CTGGAATTGGTACAGTCCGCAATCTGGTGGGTCTGGATCTCTCTGACAATTCTATGGACA
ACGAACTTCCTAACTTTTTTGGCTGGTTGCAGCAAAACAAATCACTCCGTGAATTGAAGA
TTGGCCGAAACTTCTCAGGGATTAAACAGAAAAACATAAGGCCAGTGATGGACAGCATCG
TTGAGCTGGTTCAAGAAGAAAACTCGGTTTTGGAATCCCTCTCCCTGGCTGATTCGAAGT
TGCGAGAATACACACATGTGCTGCTGGGATGTCTTGGTAGTAATACCTCACTGACGGAAC
TCGACATAAGTGGAAATCAGATGGGAGACACTGGTGCCAGAGTTCTCGCCAAATCCGTTC
AGATCAACTCGAAACTAAAAATTCTCAAGTTTGACCGGAACAATCTTTCAGCTGCAGGTT
TTCATGAACTTGCTGTTGCCATGGGGAAAAACTATACACTGAGGTACATGCCGTACCCGG
TCAACGACTGCATGGGAGCGATGAAGCAGCACCCGGAAAGGACTCAAACTGCTTTGGCTC
AAATACAAGATCTTCTATTGCGAAATGCCAACACCAACAGAGCGAGCAACGACCAACAGT
TCAGACTACAAAAGGTCGTCACTTCAACTGCACAACAAGTTCTAGACAAGGTGGCAGAAA
AAGTTGATGACGTGATTAACGCCTTGGAGATTATCGATGCCGAATCAGAGAACGCCAGTT
GCGTCATAGTTGGCAAGAAATTGGTCAGAGACGCGAAAAACTCCAAAGAGCTTTTGTCAG
ATATATACGGTCTTGGCATGGAAAAATCTGCCGGGCCCAGCAGTCAGTTACAATGCAAAA
TATCTGAGATGGCAACGAACGTGGACAAAATGGTGCAAGAGCACATCAAGAGTACTGTTG
ATGCGATGACCAAGAATGCTGAGTCCCAGTGTCCACAAATATACGAGGAAATTAAATCGG
ACCTAACCGAATCGGTTGCTGCGAGACAAGTGCTTCCCGCATATTCCGTCAGAGATCACG
TGATACAGTCGTCGGGAACTGAAATTGTCAACCAAGTTAGCGAGTTAAACCTTTCCATCG
CAACTCTGATATCGGACAAAGTAACCGACAGTCTACTGGCAGCCTTATCTCAATGCAACC
TCCAGTTGGTAAG

InterProScan

Gene3D
PH-like_dom_sf (IPR011993) - T[2-116] 1.7E-28
PANTHER
CARMIL1 (IPR029764) - T[5-882] 1.4E-248
Gene3D
LRR_dom_sf (IPR032675) - T[160-688] 3.0E-135
Pfam
Leu-rich_rpt (IPR001611) - T[279-298] 0.038 - T[593-616] 1.0E-5
Pfam
CARMIL_C (IPR031943) - T[806-882] 4.2E-15

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CARL1_HUMAN 41.097 % 661 0
CARL3_HUMAN 33.486 % 488 2.85E-154
CARL2_HUMAN 29.658 % 397 3.31E-120





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