Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S294.g06833.02.t

Possible name(s)

ACTN1; ACTN4; DIXDC1

Gene model

Phmamm.CG.MTP2014.S294.g06833

Location

S294 [63,955 / 69,232]

Sequences

Amino acid sequence

Length: 364

>Phmamm.CG.MTP2014.S294.g06833.02.p
MELQEQIKAYQAWVNSQLKKKSQQITDFGKDLRDGTALITIVEIISGQCLEKLNPRNEEE
KKQNVSKVIDFMKSSGIKLPHVTTEEIVGGNVKSMMQLILALAAHFKPASIDGKKGETPT
RQGYREKKVASLQLEEKHKEMERSFEKDLSEIESLAIELQKILLLDSEGNLLSGANIEED
LVITRAELNLALEEKLKQEKELMGIQQKYKELSTSNSALLSRLKQQDEDLMLLRQQLLHS
NLARDKLKSEKAELSVELDDMKDEMERYQSKYYEKELKCQQLDNQLVLEKNCHSPDAVFH
DLRVGDITLGEFKSAIKKQGNYRYIFKALDPELGTVKEEVFRDDDVIPGWEGKIVAWVEE
ELNV

Nucleotide sequence

Length: 1,095

>Phmamm.CG.MTP2014.S294.g06833.02.t
ATGGAATTACAGGAGCAGATCAAAGCCTACCAAGCTTGGGTGAATAGCCAACTGAAAAAA
AAGTCGCAACAAATAACAGACTTTGGAAAAGATTTGCGAGATGGAACAGCTTTAATCACT
ATTGTAGAGATTATTTCTGGTCAGTGTTTGGAAAAATTAAATCCAAGAAACGAAGAAGAA
AAGAAACAAAATGTTTCCAAAGTTATTGATTTCATGAAAAGCAGTGGAATCAAACTTCCT
CATGTTACCACAGAAGAAATTGTTGGTGGGAACGTTAAGAGTATGATGCAACTGATTCTA
GCGTTGGCAGCTCACTTTAAACCTGCAAGTATTGATGGAAAGAAAGGAGAAACACCAACA
AGACAAGGCTACAGAGAGAAGAAGGTGGCTTCACTTCAGTTAGAAGAAAAGCATAAAGAA
ATGGAGAGAAGTTTTGAAAAAGATCTGAGTGAAATTGAAAGCCTGGCAATCGAGCTGCAA
AAAATTCTTCTTCTGGATTCAGAAGGAAATCTCCTCAGTGGTGCAAATATTGAGGAGGAT
CTGGTGATCACTCGAGCGGAACTGAATCTAGCACTGGAAGAAAAACTAAAACAGGAAAAG
GAATTAATGGGAATCCAACAGAAGTACAAGGAGCTTTCCACATCCAACTCTGCTCTGCTT
TCCCGATTGAAACAACAGGATGAAGATTTGATGTTGCTACGACAACAACTTCTGCATAGC
AACCTGGCAAGAGACAAACTGAAATCTGAAAAGGCAGAATTATCTGTTGAACTTGATGAC
ATGAAGGATGAGATGGAAAGGTACCAGAGCAAATATTATGAGAAGGAATTGAAATGCCAA
CAGTTGGACAATCAACTGGTTTTAGAAAAGAACTGCCACTCGCCGGATGCAGTGTTCCAC
GATCTCAGGGTCGGAGATATAACCTTGGGAGAGTTTAAAAGCGCGATTAAAAAGCAAGGC
AACTACCGATATATTTTCAAAGCCCTCGACCCAGAACTCGGCACGGTGAAAGAAGAGGTT
TTTCGTGATGATGACGTAATACCGGGTTGGGAGGGAAAAATCGTGGCATGGGTCGAAGAA
GAATTAAACGTGTGA

InterProScan

Gene3D	CH_dom_sf (IPR036872) - T[2-112] 1.4E-29
PANTHER	Dsh/Dvl-rel (IPR015506) - T[3-119] 3.7E-93 - T[124-286] 3.7E-93 - T[303-360] 3.7E-93
ProSiteProfiles	CH-domain (IPR001715) - T[4-107] 20.756
SUPERFAMILY	CH_dom_sf (IPR036872) - T[4-109] 1.7E-25
CDD	CH-domain (IPR001715) - T[5-106] 8.91409E-16
Pfam	CH-domain (IPR001715) - T[5-107] 4.4E-18
ProSitePatterns	Actinin_actin-bd_CS (IPR001589) - T[6-15] .
SMART	CH-domain (IPR001715) - T[6-105] 1.9E-13
ProSiteProfiles	DIX (IPR001158) - T[282-362] 23.572
SMART	DIX (IPR001158) - T[283-362] 2.9E-8
Gene3D	DIX_dom_sf (IPR038207) - T[288-363] 7.4E-25
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[300-360] 3.93E-17
Pfam	DIX (IPR001158) - T[303-360] 1.1E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DIXC1_HUMAN	46.847 %	108	1.03E-25