Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2960.g17293.01.t

Possible name(s)

DDX58; DHX58; IFIH1

Gene model

Phmamm.CG.MTP2014.S2960.g17293

Location

S2960 [12,200 / 14,880]

Sequences

Amino acid sequence

Length: 277

>Phmamm.CG.MTP2014.S2960.g17293.01.p
MDVKGPAPNMDGKGPAPNMDGKGPAPNMDVVTEESEAVTEGEKHPAPNMEGTGKTFVAVR
ICREHISKNSDAKVVFLVHKVPLVTQQFNVFKKNLKLADVTIDSLWGEKLAKTPVAEVMK
ENKVVIMTHDVLKNILRSKDFQLEKISLLFFDECHNTMKNHPYRAIMEIYFDQKRKGSQV
PQIVGLTATPGSGNARGTSEACRHIQTLLSYLDVVIPPVTVTENTEELAQYVSEGSFETV
PVKRNPKDKFAAILIKLMMEIEGQIKDKLEKNENCMY

Nucleotide sequence

Length: 834

>Phmamm.CG.MTP2014.S2960.g17293.01.t
ATGGATGTTAAGGGTCCAGCTCCAAACATGGACGGTAAGGGTCCAGCTCCAAACATGGAT
GGTAAGGGTCCAGCTCCAAACATGGATGTTGTAACTGAAGAGAGTGAGGCTGTGACAGAA
GGCGAGAAACATCCAGCTCCCAACATGGAGGGAACTGGAAAGACATTTGTAGCTGTTCGA
ATCTGTCGGGAACACATCAGCAAAAACAGCGACGCTAAAGTTGTTTTTTTGGTGCACAAA
GTTCCATTAGTTACTCAACAGTTCAATGTGTTCAAAAAAAATCTTAAATTGGCTGATGTC
ACAATAGATAGTTTGTGGGGTGAAAAGCTTGCTAAAACTCCTGTGGCCGAAGTAATGAAA
GAAAACAAAGTTGTGATTATGACACATGATGTATTGAAGAACATTTTAAGATCTAAAGAT
TTTCAGCTAGAAAAGATTTCTCTATTGTTTTTTGATGAATGCCACAACACAATGAAAAAC
CACCCTTACAGGGCAATCATGGAAATATATTTTGATCAGAAACGGAAAGGAAGTCAAGTT
CCACAAATTGTCGGACTGACTGCGACTCCCGGTTCAGGCAATGCTCGTGGGACGTCTGAA
GCTTGTCGTCACATTCAAACGCTTCTCTCTTATCTTGATGTTGTCATTCCACCTGTAACA
GTTACAGAAAACACAGAAGAACTCGCTCAATATGTTTCAGAAGGAAGTTTTGAGACTGTT
CCAGTAAAAAGAAATCCAAAAGACAAATTCGCAGCAATTCTGATTAAACTTATGATGGAG
ATTGAAGGTCAAATTAAGGACAAACTGGAAAAGAATGAAAACTGTATGTACTGA

InterProScan

SMART	Helicase_ATP-bd (IPR014001) - T[34-215] 5.5E-13
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[51-196] 9.52E-27
ProSiteProfiles	Helicase_ATP-bd (IPR014001) - T[51-208] 17.469
Pfam	Helicase/UvrB_N (IPR006935) - T[51-190] 9.3E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DHX58_HUMAN	31.718 %	98.2	4.82E-23
DDX58_HUMAN	36.957 %	137	1.48E-36
IFIH1_HUMAN	34.764 %	99.8	1.45E-23