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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R3.1...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2960.g17293.01.t

Possible name(s)

DDX58; DHX58; IFIH1

Gene model

Phmamm.CG.MTP2014.S2960.g17293

Location

S2960 [12,200 / 14,880]

Sequences

Amino acid sequence

Length: 277

>Phmamm.CG.MTP2014.S2960.g17293.01.p
MDVKGPAPNMDGKGPAPNMDGKGPAPNMDVVTEESEAVTEGEKHPAPNMEGTGKTFVAVR
ICREHISKNSDAKVVFLVHKVPLVTQQFNVFKKNLKLADVTIDSLWGEKLAKTPVAEVMK
ENKVVIMTHDVLKNILRSKDFQLEKISLLFFDECHNTMKNHPYRAIMEIYFDQKRKGSQV
PQIVGLTATPGSGNARGTSEACRHIQTLLSYLDVVIPPVTVTENTEELAQYVSEGSFETV
PVKRNPKDKFAAILIKLMMEIEGQIKDKLEKNENCMY

Nucleotide sequence

Length: 834

>Phmamm.CG.MTP2014.S2960.g17293.01.t
ATGGATGTTAAGGGTCCAGCTCCAAACATGGACGGTAAGGGTCCAGCTCCAAACATGGAT
GGTAAGGGTCCAGCTCCAAACATGGATGTTGTAACTGAAGAGAGTGAGGCTGTGACAGAA
GGCGAGAAACATCCAGCTCCCAACATGGAGGGAACTGGAAAGACATTTGTAGCTGTTCGA
ATCTGTCGGGAACACATCAGCAAAAACAGCGACGCTAAAGTTGTTTTTTTGGTGCACAAA
GTTCCATTAGTTACTCAACAGTTCAATGTGTTCAAAAAAAATCTTAAATTGGCTGATGTC
ACAATAGATAGTTTGTGGGGTGAAAAGCTTGCTAAAACTCCTGTGGCCGAAGTAATGAAA
GAAAACAAAGTTGTGATTATGACACATGATGTATTGAAGAACATTTTAAGATCTAAAGAT
TTTCAGCTAGAAAAGATTTCTCTATTGTTTTTTGATGAATGCCACAACACAATGAAAAAC
CACCCTTACAGGGCAATCATGGAAATATATTTTGATCAGAAACGGAAAGGAAGTCAAGTT
CCACAAATTGTCGGACTGACTGCGACTCCCGGTTCAGGCAATGCTCGTGGGACGTCTGAA
GCTTGTCGTCACATTCAAACGCTTCTCTCTTATCTTGATGTTGTCATTCCACCTGTAACA
GTTACAGAAAACACAGAAGAACTCGCTCAATATGTTTCAGAAGGAAGTTTTGAGACTGTT
CCAGTAAAAAGAAATCCAAAAGACAAATTCGCAGCAATTCTGATTAAACTTATGATGGAG
ATTGAAGGTCAAATTAAGGACAAACTGGAAAAGAATGAAAACTGTATGTACTGA

InterProScan

SMART
Helicase_ATP-bd (IPR014001) - T[34-215] 5.5E-13
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[51-196] 9.52E-27
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[51-208] 17.469
Pfam
Helicase/UvrB_N (IPR006935) - T[51-190] 9.3E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DHX58_HUMAN 31.718 % 98.2 4.82E-23
DDX58_HUMAN 36.957 % 137 1.48E-36
IFIH1_HUMAN 34.764 % 99.8 1.45E-23