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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S11....' > 
  2. Transcript 'Harore.CG.MTP2014.S1...' > 
  3. Transcript 'Haaura.CG.MTP2014.S1...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2.g00081.01.t

Possible name(s)

FERD3L; HAND2; PTF1A

Gene model

Phmamm.CG.MTP2014.S2.g00081

Location

S2 [252,695 / 255,333]

Sequences

Amino acid sequence

Length: 313

>Phmamm.CG.MTP2014.S2.g00081.01.p
TDFNTLEEQLSDNETRGLLGFGAPLGSDVTEGCMTSGEVEPVCTLGQKFVEEVTELPPQT
DTEEIETCTKSFHEMQTFKAVGIECQSPISLIDQDLTGLQWTDEAGNLDCEDFVLHPGAP
EEGQFLKSIAEPEYLSILPQALNGDNGNSYLNKNTTQMYNTAQDNQNYPRENRRKSTRKS
RSSKRLATRRTRKNPLKRAPLPHERLTQSTPHFDDEVMIRATACDRERKRMMSINSAFDE
LREQVPTFPYEKRLSKIDTLRLAIAYIGLLKDVLRSNEEPRKFVNDFVNGRKQASAEWDT
SDLTARMAWLKWK

Nucleotide sequence

Length: 945

>Phmamm.CG.MTP2014.S2.g00081.01.t
GACTGATTTTAATACATTGGAGGAGCAATTGTCCGATAACGAGACACGTGGACTGTTAGG
TTTTGGCGCGCCTTTGGGCAGTGACGTCACAGAAGGGTGTATGACGTCAGGTGAGGTTGA
GCCTGTCTGCACTTTGGGACAGAAATTTGTAGAAGAGGTTACAGAGTTACCTCCCCAAAC
TGACACCGAGGAGATTGAGACTTGCACAAAAAGCTTTCATGAGATGCAGACATTTAAAGC
AGTTGGCATTGAATGCCAGTCTCCAATTTCACTTATTGATCAGGATTTAACGGGTCTGCA
ATGGACAGACGAAGCGGGTAACTTAGACTGTGAAGATTTTGTGCTGCACCCTGGTGCTCC
AGAGGAAGGCCAGTTTTTAAAGTCGATAGCAGAACCGGAATATTTGAGTATTTTGCCGCA
AGCGTTAAATGGTGACAATGGCAACTCATATTTGAATAAAAATACTACACAGATGTACAA
CACCGCTCAAGATAATCAAAATTATCCACGAGAAAACAGAAGAAAATCAACAAGAAAATC
GCGCTCATCTAAACGTTTGGCAACAAGAAGAACGCGGAAAAACCCTCTTAAACGAGCCCC
ACTGCCCCATGAACGGCTCACCCAATCTACACCGCATTTCGACGATGAAGTCATGATTAG
GGCGACAGCTTGTGACAGGGAAAGAAAAAGAATGATGAGCATTAACAGCGCGTTTGATGA
GCTGAGGGAACAAGTGCCCACATTCCCGTATGAAAAGAGACTCTCAAAGATCGACACACT
TCGCTTGGCAATCGCCTATATCGGTTTGCTCAAGGACGTTTTGAGGTCAAACGAGGAGCC
TCGAAAATTTGTCAACGATTTTGTAAACGGAAGAAAACAAGCATCTGCAGAATGGGATAC
GAGTGATTTGACTGCAAGAATGGCATGGCTTAAATGGAAATGAAG

InterProScan

CDD
bHLH_dom (IPR011598) - T[216-275] 2.97684E-16
Gene3D
HLH_DNA-bd_sf (IPR036638) - T[216-281] 1.4E-23
ProSiteProfiles
bHLH_dom (IPR011598) - T[218-270] 15.713
SUPERFAMILY
HLH_DNA-bd_sf (IPR036638) - T[219-279] 7.2E-17
Pfam
bHLH_dom (IPR011598) - T[220-270] 7.4E-17
SMART
bHLH_dom (IPR011598) - T[224-276] 7.5E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FER3L_HUMAN 60 % 75.1 2.45E-16