Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S2.g00081.02.t

Possible name(s)

FERD3L; HAND2; PTF1A

Gene model

Phmamm.CG.MTP2014.S2.g00081

Location

S2 [252,697 / 255,380]

Sequences

Amino acid sequence

Length: 329

>Phmamm.CG.MTP2014.S2.g00081.02.p
MSSYTSLLSIEHSLDATDFNTLEEQLSDNETRGLLGFGAPLGSDVTEGCMTSGEVEPVCT
LGQKFVEEVTELPPQTDTEEIETCTKSFHEMQTFKAVGIECQSPISLIDQDLTGLQWTDE
AGNLDCEDFVLHPGAPEEGQFLKSIAEPEYLSILPQALNGDNGNSYLNKNTTQMYNTAQD
NQNYPRENRRKSTRKSRSSKRLATRRTRKNPLKRAPLPHERLTQSTPHFDDEVMIRATAC
DRERKRMMSINSAFDELREQVPTFPYEKRLSKIDTLRLAIAYIGLLKDVLRSNEEPRKFV
NDFVNGRKQASAEWDTSDLTARMAWLKWK

Nucleotide sequence

Length: 990

>Phmamm.CG.MTP2014.S2.g00081.02.t
ATGAGCTCCTATACTTCATTACTATCTATTGAGCATAGTTTAGATGCGACTGATTTTAAT
ACATTGGAGGAGCAATTGTCCGATAACGAGACACGTGGACTGTTAGGTTTTGGCGCGCCT
TTGGGCAGTGACGTCACAGAAGGGTGTATGACGTCAGGTGAGGTTGAGCCTGTCTGCACT
TTGGGACAGAAATTTGTAGAAGAGGTTACAGAGTTACCTCCCCAAACTGACACCGAGGAG
ATTGAGACTTGCACAAAAAGCTTTCATGAGATGCAGACATTTAAAGCAGTTGGCATTGAA
TGCCAGTCTCCAATTTCACTTATTGATCAGGATTTAACGGGTCTGCAATGGACAGACGAA
GCGGGTAACTTAGACTGTGAAGATTTTGTGCTGCACCCTGGTGCTCCAGAGGAAGGCCAG
TTTTTAAAGTCGATAGCAGAACCGGAATATTTGAGTATTTTGCCGCAAGCGTTAAATGGT
GACAATGGCAACTCATATTTGAATAAAAATACTACACAGATGTACAACACCGCTCAAGAT
AATCAAAATTATCCACGAGAAAACAGAAGAAAATCAACAAGAAAATCGCGCTCATCTAAA
CGTTTGGCAACAAGAAGAACGCGGAAAAACCCTCTTAAACGAGCCCCACTGCCCCATGAA
CGGCTCACCCAATCTACACCGCATTTCGACGATGAAGTCATGATTAGGGCGACAGCTTGT
GACAGGGAAAGAAAAAGAATGATGAGCATTAACAGCGCGTTTGATGAGCTGAGGGAACAA
GTGCCCACATTCCCGTATGAAAAGAGACTCTCAAAGATCGACACACTTCGCTTGGCAATC
GCCTATATCGGTTTGCTCAAGGACGTTTTGAGGTCAAACGAGGAGCCTCGAAAATTTGTC
AACGATTTTGTAAACGGAAGAAAACAAGCATCTGCAGAATGGGATACGAGTGATTTGACT
GCAAGAATGGCATGGCTTAAATGGAAATGA

InterProScan

Gene3D	HLH_DNA-bd_sf (IPR036638) - T[232-297] 1.6E-23
CDD	bHLH_dom (IPR011598) - T[232-291] 3.14235E-16
ProSiteProfiles	bHLH_dom (IPR011598) - T[234-286] 15.713
SUPERFAMILY	HLH_DNA-bd_sf (IPR036638) - T[235-295] 7.85E-17
Pfam	bHLH_dom (IPR011598) - T[236-286] 8.0E-17
SMART	bHLH_dom (IPR011598) - T[240-292] 7.5E-16

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
FER3L_HUMAN	60 %	75.1	2.43E-16