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  1. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S3010.g17355.01.t

Possible name(s)

NLRP12; NLRP3; NOD1

Location

S3010 [9,633 / 13,988]

Sequences

Amino acid sequence

Length: 704

>Phmamm.CG.MTP2014.S3010.g17355.01.p
MXXXXXXXXXXXXXXXXXXXXXXXXINLKRKTDLFELLFASLIAEGNLAIQKAEKKELIN
FILRDPNTVIIIDGLDEAKTENLHSYPHVLPFEWTEPMAVLFNILNCKLLKNAYKLVTSR
ITQFIDASPEYRPKFVLEILGLAPSEQQKLARCVCGKQFDRVWKILQDNPALLECCVVPV
NMRMALNFLLGGGGTLDTITFTGVYIAMLNRYIRSKHCSFEKGMNVVKKLCDLAFDGWQK
NKSLFSDDDLEQFKIPLTMQQAFVNAAVDSEDGLAIEILQQDKVSYFVHRSWQELLVALR
LVLFMPLNEFESFLENAFESGDLENVLKFCFGICKDSVFAKARRLSPAAQVNEIEEKKKF
LGLIAESKAKQLSEGVLESNEEHNMQKWFHLFACLNELGSDDISLPVTKLLPTIADIVGS
VFSSDITNMASLYKLNNTTLNLKDVYLSFVGNALQSFGKFVQEHRVKILIRFFLQNCPDE
QLQFAGSFLPHVESFIIPPFKSIGDSTDRDRKNALTLARSIKDGLLQIDHPHQMELHLSF
IPFRDEGVSILSSGVGKVAELDMSGIGMTSVGAVKLGEHLEMETTQSMVTVNLFVTFLLS
XKSIHKMKKLEMAGCGITCKGMPGITQNILNSQTKIPCLNLSWNKLGDDGAQELGKCLHL
VEELILRNCDITSTGADALADGLSKLQIPVSKSMLSVSKKLLCS

Nucleotide sequence

Length: 2,115

>Phmamm.CG.MTP2014.S3010.g17355.01.t
ATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCATCAACTTGAAGCGAAAAACAGATTTGTTTGAATTACTTTTTGCA
TCCCTGATTGCAGAGGGAAATCTTGCAATACAGAAAGCAGAGAAAAAGGAGCTGATTAAT
TTCATCTTGAGGGATCCCAACACAGTAATAATCATTGATGGTCTGGATGAGGCTAAAACT
GAAAACTTACATTCGTATCCGCATGTATTACCATTTGAATGGACAGAACCAATGGCAGTA
TTATTTAATATTCTGAATTGCAAACTACTGAAGAATGCTTACAAGCTGGTAACATCAAGA
ATTACTCAGTTTATTGATGCTTCTCCAGAATACAGACCAAAATTTGTTTTGGAAATTTTG
GGTTTAGCACCAAGTGAACAGCAAAAACTTGCTAGGTGTGTATGTGGTAAACAGTTTGAC
AGAGTTTGGAAAATCCTTCAAGACAACCCAGCTTTGTTGGAATGCTGTGTAGTACCTGTC
AACATGCGCATGGCTCTCAACTTTCTGTTGGGAGGAGGAGGAACATTAGATACTATCACA
TTCACAGGTGTTTACATTGCAATGTTGAACAGATACATTCGTTCAAAGCATTGCTCTTTT
GAAAAAGGCATGAATGTAGTTAAGAAGCTATGTGACTTAGCATTTGATGGGTGGCAAAAA
AACAAGTCTCTGTTTTCAGATGATGACTTGGAGCAGTTTAAGATTCCATTGACAATGCAA
CAAGCATTTGTCAATGCAGCTGTAGATTCAGAGGATGGTCTTGCAATTGAGATTTTGCAG
CAAGACAAAGTTAGCTACTTTGTTCATCGCTCCTGGCAAGAGTTGTTGGTTGCACTCAGA
CTTGTTTTGTTTATGCCTCTAAATGAGTTTGAATCTTTCCTTGAAAATGCTTTTGAATCT
GGAGATTTAGAAAATGTTCTAAAGTTTTGTTTTGGCATATGCAAAGACAGTGTTTTTGCA
AAAGCAAGACGACTTTCTCCTGCAGCACAAGTTAATGAAATAGAAGAGAAAAAAAAGTTT
CTTGGTTTAATTGCTGAATCCAAAGCAAAGCAGTTGTCAGAGGGTGTACTTGAAAGTAAT
GAAGAACATAATATGCAGAAATGGTTTCATCTTTTTGCATGTTTAAATGAACTTGGCAGT
GATGATATTAGCTTACCTGTGACCAAACTTCTGCCAACTATTGCTGACATAGTGGGTTCT
GTATTTTCATCTGATATCACAAACATGGCTTCACTTTACAAACTGAACAATACCACTCTG
AATTTGAAAGATGTTTATCTGTCATTTGTTGGAAATGCTTTGCAGAGTTTTGGAAAATTT
GTGCAAGAACACCGAGTTAAAATTTTGATTCGCTTCTTTTTACAAAATTGTCCTGATGAA
CAACTGCAGTTTGCAGGAAGCTTCCTTCCTCATGTGGAAAGCTTCATCATTCCACCATTT
AAATCCATTGGTGATTCAACAGACAGGGACAGAAAGAATGCATTAACATTGGCCAGAAGC
ATTAAAGATGGACTTCTGCAAATTGACCACCCACATCAGATGGAGTTACACTTGAGTTTC
ATACCTTTTAGAGATGAAGGTGTGAGCATACTAAGCAGTGGGGTGGGCAAAGTAGCTGAA
CTTGATATGAGTGGGATTGGCATGACATCAGTTGGTGCTGTTAAGTTGGGTGAACATCTT
GAGATGGAAACTACACAGTCCATGGTAACTGTGAATTTGTTTGTCACTTTTCTATTGTCA
TTNAAGTCAATCCACAAAATGAAAAAGCTTGAAATGGCTGGTTGTGGAATCACATGTAAA
GGAATGCCAGGCATCACTCAAAACATCCTAAACTCTCAAACTAAGATTCCCTGCTTGAAT
TTGTCATGGAACAAGTTGGGTGATGATGGGGCCCAGGAACTTGGAAAATGTTTGCATCTG
GTGGAGGAACTTATCTTGCGTAATTGTGACATCACTTCTACTGGTGCAGATGCATTGGCT
GATGGATTATCAAAGTTGCAGATACCTGTAAGTAAATCAATGTTGTCTGTGTCGAAGAAG
TTACTTTGCAGCTGA

InterProScan

Pfam
NACHT_NTPase (IPR007111) - T[38-154] 1.5E-6
Gene3D
LRR_dom_sf (IPR032675) - T[511-700] 3.3E-19
Pfam
Leu-rich_rpt (IPR001611) - T[638-654] 0.0047 - T[661-680] 0.6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value