Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S302.g06961.01.t

Possible name(s)

TRMT1; TRMT1L

Gene model

Phmamm.CG.MTP2014.S302.g06961

Location

S302 [84,976 / 86,293]

Sequences

Amino acid sequence

Length: 438

>Phmamm.CG.MTP2014.S302.g06961.01.p
MSCINGNVLEHGVSYQTEGPIEAALTSKRVSKIVELSTSRAIALCCVKLLSDKTAGPISV
LDAINAFALPGLQWVKHINKDIKVTSNVAKELQNDICGQNEDVHQMEIVAEDPHVLMHSR
KFKFIYIEAIGSAVTYLDAALRSINHEGLLCVTSTDIAILNNKSPDTALRLYGAKFLKSE
YWGEMAVRVIAANVLRAAGRWGKGVTIEMCTVTEYSVTVVFHVLRGAKHVEPCLPLVQPL
SHCLNCQARAFNEDCSQTLPLNEQTPLCGCGDNNTSALTQLGPMWSGSIFNPTFIQKLLD
QAIDFKMSESLTKIFQLLLIESVCCKSELAENALLKLPETSTSNQDGPPEKKAKSDEESI
VIKLDDIQPAPLFYFDFQHHSVKGGNPPKLSAVVERLRKLGHRASKTHFGPRCVRTSASL
QQFNDLLKQMWEEISKTT

Nucleotide sequence

Length: 1,317

>Phmamm.CG.MTP2014.S302.g06961.01.t
ATGAGCTGCATAAATGGTAATGTACTTGAACATGGTGTTTCCTATCAAACTGAAGGACCC
ATTGAAGCTGCACTGACCTCAAAACGAGTTTCAAAGATTGTTGAGTTAAGCACAAGCAGA
GCAATAGCACTTTGCTGTGTAAAACTGCTTTCAGATAAAACTGCTGGACCAATTTCTGTT
TTGGATGCCATAAATGCATTTGCATTACCAGGATTGCAATGGGTTAAACATATCAATAAG
GACATTAAAGTAACATCCAACGTGGCAAAGGAGTTGCAAAATGATATCTGCGGTCAGAAT
GAAGATGTCCATCAGATGGAAATAGTTGCAGAGGATCCACATGTTCTTATGCACAGCAGA
AAATTCAAATTTATTTACATTGAGGCAATAGGATCTGCAGTAACCTATCTTGATGCTGCC
CTGCGTTCTATTAACCACGAAGGACTACTTTGTGTAACAAGTACGGACATTGCAATACTC
AACAACAAATCACCAGATACTGCATTAAGACTTTATGGGGCAAAGTTTTTAAAGAGTGAA
TATTGGGGAGAGATGGCAGTTAGAGTGATTGCAGCCAATGTACTAAGAGCTGCTGGAAGA
TGGGGCAAAGGGGTGACTATAGAAATGTGTACTGTAACAGAATACAGTGTAACTGTTGTG
TTCCATGTTTTAAGGGGTGCAAAACATGTTGAACCTTGTCTCCCACTTGTGCAACCACTG
TCTCATTGTCTTAACTGTCAAGCACGTGCATTTAATGAAGATTGTTCTCAGACATTACCA
TTAAATGAACAAACACCATTGTGTGGGTGTGGGGACAATAATACTTCAGCTCTTACGCAA
CTTGGGCCCATGTGGTCAGGTAGCATTTTTAATCCCACTTTTATACAGAAGCTATTGGAT
CAGGCAATAGACTTCAAAATGTCAGAGAGTCTTACAAAAATATTTCAACTGCTTTTGATA
GAGAGTGTGTGCTGCAAATCGGAACTAGCAGAAAATGCGTTGCTGAAGTTGCCAGAGACG
TCTACATCGAACCAGGATGGTCCTCCTGAGAAAAAGGCAAAATCTGATGAAGAAAGTATT
GTGATTAAGTTGGATGATATACAGCCAGCACCATTGTTTTATTTTGACTTCCAGCATCAT
AGTGTAAAAGGTGGTAATCCACCCAAGCTGTCAGCAGTGGTTGAAAGACTGCGCAAACTT
GGACATAGAGCAAGCAAAACCCATTTTGGTCCTCGGTGTGTTAGGACATCAGCATCTTTG
CAACAGTTTAATGATCTTCTAAAACAAATGTGGGAAGAAATATCAAAGACAACGTAG

InterProScan

ProSiteProfiles	Trm1 (IPR002905) - T[1-427] 47.771
SUPERFAMILY	SAM-dependent_MTases (IPR029063) - T[36-428] 2.49E-46
Pfam	Trm1 (IPR002905) - T[40-319] 1.5E-38 - T[367-427] 2.2E-6
PANTHER	Trm1 (IPR002905) - T[97-429] 2.6E-82

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRM1L_HUMAN	31.364 %	178	3.14E-49
TRM1_HUMAN	26.761 %	84	3.16E-17