- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S306.g07023.01.t
Possible name(s)
RBM23; RBM41; RNPC3
Gene model
Location
S306 [57,373 / 58,852]
Amino acid sequence
Length: 492
>Phmamm.CG.MTP2014.S306.g07023.01.p
MSNYKKTLFVKHLPPSLSQNEKKQLFELFGPKDIRIMPDHGRFKNTAFITFENDNNAKEA
LTKLHQLEILDFTLSVEYARKCHDDLLKINTDDRINDSDKTETEPKPKEAINKINTDSKK
CQFCRRLPPIAPGFGLEYPANPGLKYKYPEPNSNILLNICAALVTVPKFYTQVLHLMNKM
NMYCPFSQATHIPPMLIEHIKQTLNVNETLQPNSAGGNNDMEESDVEMVSNTESEYESSN
EDTSKKFDPNLLPPEKVLRVLKRKRKAISSSPKRKLARLKDTDTLKAKQTHQTGDKDGIL
FDKSEVSAATKHIKLKLPSSIELSEDKTNDAISAEETGSGFGRIKPKHATENVNTEEDDS
DYKISFDFISRKQLDSGRLSSKDMSSHSVFKNYRPGEPSCRLYVKNLSKKVTDKDMRHIF
GAFVDFDNEEEAKMFDVRVMTQGRMKGQAFVGMPSVKTAKEALNSVNGYQLIGKPMVVLY
ARSAKPKSDSTL
Nucleotide sequence
Length: 1,479
>Phmamm.CG.MTP2014.S306.g07023.01.t
ATGTCAAATTACAAAAAGACACTATTTGTTAAGCATCTTCCACCGAGTCTTAGTCAAAAT
GAAAAGAAACAATTGTTTGAGTTGTTTGGTCCCAAAGACATCAGGATAATGCCAGACCAT
GGACGATTCAAAAACACTGCATTTATAACATTTGAAAACGATAATAATGCAAAGGAAGCT
TTGACAAAGTTACATCAGTTGGAAATACTAGATTTTACTCTGTCAGTTGAATATGCCAGA
AAATGTCATGATGATTTACTAAAAATTAACACTGATGACAGAATAAACGACAGTGATAAA
ACAGAGACTGAACCTAAACCTAAAGAAGCTATTAATAAAATTAATACTGATAGTAAAAAA
TGTCAGTTCTGCCGCAGACTGCCTCCAATTGCTCCTGGGTTTGGTTTGGAATATCCTGCA
AATCCTGGATTAAAATACAAATATCCTGAACCAAACTCCAACATTTTGTTGAATATTTGT
GCTGCTCTGGTTACAGTTCCAAAGTTTTACACCCAAGTTTTGCATTTGATGAACAAAATG
AACATGTATTGTCCATTTTCGCAAGCAACACATATTCCTCCAATGCTGATAGAACACATA
AAACAGACATTGAATGTTAATGAAACTTTGCAGCCTAATTCTGCAGGTGGAAATAATGAC
ATGGAAGAAAGTGATGTTGAAATGGTGAGTAACACAGAGTCTGAATATGAAAGCAGCAAT
GAAGACACATCGAAAAAATTCGACCCCAATCTATTGCCTCCAGAAAAAGTACTTAGGGTT
TTAAAACGGAAGAGAAAGGCAATTTCTAGTTCACCAAAACGAAAGCTGGCACGACTAAAG
GACACAGACACATTAAAGGCCAAACAAACTCACCAGACTGGTGACAAAGATGGCATACTT
TTTGACAAATCTGAAGTTAGTGCAGCCACTAAGCATATTAAGTTAAAATTGCCTTCATCC
ATTGAATTATCTGAAGATAAGACTAACGATGCAATTTCTGCCGAAGAAACTGGGTCTGGC
TTCGGAAGAATTAAGCCTAAGCATGCTACAGAAAATGTAAACACTGAAGAAGATGATAGT
GATTACAAAATATCTTTTGATTTCATATCCAGAAAACAATTAGATTCTGGTAGATTAAGC
AGTAAAGACATGTCATCACACTCTGTGTTTAAAAATTATCGTCCAGGGGAACCGTCTTGT
CGACTATATGTCAAAAACCTGTCTAAAAAGGTTACAGATAAGGATATGCGGCATATCTTT
GGTGCATTTGTTGATTTTGACAATGAGGAAGAAGCAAAAATGTTTGATGTGAGAGTTATG
ACACAAGGACGAATGAAGGGCCAAGCCTTTGTAGGAATGCCAAGTGTTAAAACAGCCAAA
GAAGCTCTAAATTCTGTTAATGGATATCAGTTGATTGGAAAACCTATGGTGGTGCTCTAT
GCTAGGTCTGCAAAACCGAAATCTGACAGTACATTGTAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-85] 4.5E-16 - T[396-491] 2.2E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[6-81] 13.413 - T[400-483] 14.607 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[6-80] 3.9E-16 - T[378-487] 8.33E-18 |
| SMART |
RRM_dom (IPR000504) - T[7-77] 4.1E-13 - T[401-479] 5.8E-9 |
| CDD |
RBM40_RRM1 (IPR034147) - T[7-79] 3.1494E-28 |
| Pfam |
RRM_dom (IPR000504) - T[8-74] 1.1E-12 - T[402-475] 7.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBM40_HUMAN | 37.897 % | 296 | 1.18E-94 |
| RBM41_HUMAN | 37.097 % | 92 | 3.77E-20 |