Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S3168.g17521.01.t

Possible name(s)

NLRC3; NLRP3; NLRP4

Gene model

Phmamm.CG.MTP2014.S3168.g17521

Location

S3168 [9,584 / 12,618]

Sequences

Amino acid sequence

Length: 451

>Phmamm.CG.MTP2014.S3168.g17521.01.p
MNKIAKLAWNGFKKKNSVFEKEDLDNVEIDIETFINILSVFTTEKNWGMTILDCDRKCNF
SHLIWQEYFAACYLVYFSSVDEFCKLIPQFKSHRWEVVTKFVFGLFNSDVSKVGKTCFLA
TSQTKQEFLAKETELQKLACDEMKVRIKKSEDMSRAKLVQVCSWLQEIDDETFYQEVVPF
LPLKINLTGNILLTDVSSITEVLSHSKTKHDISISQYCKFPHGSLKEFLENLMKPNIKIK
SLDLGRNKVTDEIASAIASCIHNIKELDLWNYILTTAGICKITKAISNLSQTIKILNLGG
NEVTDESASAIASCIHNIEELYLQDCELTSVGICKIAEAISNLSQPMKSLSISENTIDEE
AEKCLLGCLHNIQDELKVDVNAEFKSKYSKLPGPIKSLDIRENSIDEEAENSLFGCLHNI
QDELLVRKSDTSADFESKYARLPEPVCGTLS

Nucleotide sequence

Length: 1,356

>Phmamm.CG.MTP2014.S3168.g17521.01.t
ATGAATAAAATTGCTAAGTTGGCATGGAATGGATTTAAGAAAAAAAATTCTGTTTTCGAG
AAGGAAGATCTGGACAATGTGGAGATTGACATTGAAACATTTATTAACATTCTTTCAGTT
TTTACAACAGAAAAAAATTGGGGAATGACAATTCTTGACTGTGACAGAAAGTGCAACTTT
TCACATTTAATTTGGCAAGAGTATTTTGCTGCTTGTTACCTCGTTTACTTCTCAAGTGTT
GATGAGTTTTGTAAATTGATTCCTCAGTTTAAAAGTCACAGATGGGAGGTAGTTACCAAG
TTTGTATTTGGTCTTTTCAACTCTGATGTCAGCAAAGTTGGTAAAACTTGTTTTTTGGCA
ACAAGTCAAACCAAGCAAGAATTCCTGGCTAAGGAAACTGAATTGCAGAAACTTGCTTGT
GATGAGATGAAAGTAAGAATAAAAAAGTCTGAAGACATGAGCAGAGCAAAGCTAGTGCAA
GTCTGCTCATGGTTGCAAGAAATTGATGATGAAACATTTTATCAAGAAGTTGTCCCATTT
CTGCCTTTGAAGATAAATTTAACTGGCAACATACTTTTGACTGATGTCTCAAGCATTACA
GAAGTGCTAAGTCACTCGAAAACCAAGCATGACATCAGCATTTCACAGTACTGCAAATTT
CCTCATGGCAGCTTAAAAGAGTTTTTAGAAAACTTGATGAAACCCAACATAAAGATTAAA
TCATTGGACTTAGGTAGGAACAAAGTCACTGATGAAATTGCATCTGCAATAGCTTCCTGT
ATTCATAATATTAAAGAATTGGATCTGTGGAATTATATACTGACAACTGCTGGAATTTGT
AAAATAACAAAAGCTATTTCCAACCTTTCACAAACAATAAAAATTTTGAACCTTGGTGGG
AACGAAGTCACTGATGAAAGTGCATCTGCAATAGCTTCCTGTATTCATAATATCGAGGAA
CTGTATCTGCAGGATTGTGAACTGACAAGTGTTGGAATTTGTAAAATTGCAGAAGCCATT
TCCAACCTTTCGCAACCAATGAAATCACTTAGCATCAGTGAAAACACAATTGATGAGGAA
GCAGAAAAATGTTTGCTTGGTTGTTTGCACAACATACAAGATGAACTTAAGGTGGATGTG
AATGCAGAATTTAAATCGAAGTACTCAAAATTACCTGGACCAATAAAATCACTTGACATA
CGCGAAAACTCAATTGATGAGGAAGCAGAAAATAGTTTGTTCGGTTGTTTGCACAACATA
CAAGATGAACTTTTGGTGAGAAAATCAGACACAAGTGCAGACTTTGAATCAAAATATGCA
AGATTACCTGAACCAGTATGTGGAACATTATCATAA

InterProScan

Gene3D	LRR_dom_sf (IPR032675) - T[121-436] 2.1E-28
Pfam	Leu-rich_rpt (IPR001611) - T[236-258] 0.0012 - T[290-312] 0.0017

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value