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TRANSCRIPT CARD

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  1. Region 'REG00000792' > 
  2. Clone 'cien50077' > 
  3. Transcript 'Mooccu.CG.ELv1_2.S68...' > 
  4. Clone 'AHC0AAA59YP01' > 
  5. Transcript 'Phmamm.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S320.g07208.01.t

Possible name(s)

HOXC12; HOXD11; HOXD12

Gene model

Phmamm.CG.MTP2014.S320.g07208

Location

S320 [116,866 / 119,983]

Sequences

Amino acid sequence

Length: 497

>Phmamm.CG.MTP2014.S320.g07208.01.p
RIKGVSSRGSYPPMTAQSDSTGNYHLNMNFVVSDGNPHPAPSLPPNIISIEHSAPPPLQM
DSTKVYSPSDGYLGRSRLPSDAELGHIASHQYQRGEDIHHWSEQPKYSTALPTTDTRHKD
QISVQHLQREVKHIKPEAHQPWKNHTSVPISFGENVPSYIPEIHRKVSNSQSVDGADSTG
ELRVSPKSLASVSQSDQENGRHQPTSGVDEITRRVLQQPIPVKTDMSSPIHPAFSTVGKP
AQDHGAGYYTNDLKSRITSQGLYGNVGNTDHSRYSVSHTPASHEYHQFDSISQATAVATS
HSTDGLYFGTVDHYGAPIHQYPHFYYPHYHHQTGLHAPSADFTPFSSQVAPHDPVALVNQ
PYHHHHPGGGGGGGGGGGGGGGGGGGGGGSQHYSPDMTTIGRTGHQRRRRRPYTKYQLAE
LEREFAMNEFISREMREAIAHKVNLSDRQVKIWFQNRRMKKKRMLNRGELGGEDEDEDKL
ANDEETDERRELTFISP

Nucleotide sequence

Length: 2,441

>Phmamm.CG.MTP2014.S320.g07208.01.t
GTCGGATAAAAGGTGTCTCATCACGTGGCTCGTATCCACCAATGACAGCGCAAAGCGATT
CAACGGGGAATTACCACTTAAACATGAATTTTGTTGTCAGCGACGGGAACCCTCATCCTG
CCCCATCATTGCCCCCAAATATCATTTCAATTGAACATTCGGCTCCTCCTCCCTTACAGA
TGGACTCCACAAAGGTATATTCCCCTTCAGATGGGTATTTGGGGCGATCAAGGCTTCCTA
GTGACGCTGAGCTAGGACACATTGCAAGTCACCAGTACCAACGTGGGGAAGATATTCACC
ACTGGTCTGAACAGCCGAAATATTCCACGGCTCTGCCAACAACCGACACCCGTCATAAGG
ATCAAATTTCGGTGCAACATTTGCAAAGGGAGGTGAAGCATATTAAACCAGAAGCCCACC
AGCCCTGGAAAAACCACACTTCCGTACCTATTTCCTTTGGCGAGAACGTGCCTTCATACA
TTCCGGAAATACACCGGAAAGTAAGCAACTCCCAGTCTGTAGATGGCGCCGATTCAACAG
GGGAGCTGCGCGTCTCGCCCAAGTCCCTCGCTTCAGTGAGCCAAAGCGACCAGGAAAATG
GCCGACATCAGCCGACGTCGGGCGTCGATGAGATCACGCGGCGGGTTTTGCAGCAACCGA
TCCCGGTCAAGACCGACATGTCGAGCCCGATCCATCCCGCATTTTCGACAGTCGGCAAAC
CGGCGCAAGATCACGGTGCTGGGTACTACACAAACGATTTAAAATCCCGCATAACTTCAC
AGGGTTTGTACGGTAATGTTGGAAACACGGATCATTCAAGGTATTCAGTTTCACATACCC
CAGCCAGCCACGAATACCATCAGTTTGACTCGATCAGTCAAGCCACAGCGGTTGCTACCA
GTCATTCCACAGACGGCTTGTACTTCGGAACTGTGGACCACTACGGTGCGCCAATCCACC
AATACCCCCATTTTTATTACCCACATTATCACCACCAAACCGGTCTTCACGCTCCATCAG
CTGATTTTACGCCGTTCTCTTCTCAAGTCGCTCCTCACGACCCAGTGGCCCTAGTCAACC
AGCCATATCACCACCACCATCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCTCAGCATTACTCCCCTGATATGACGACGA
TCGGCCGCACCGGTCACCAGCGTCGCCGCCGCCGCCCGTACACCAAGTACCAGTTAGCTG
AATTGGAAAGGGAATTCGCTATGAACGAGTTCATCAGCAGGGAAATGCGAGAGGCAATAG
CCCATAAGGTTAACTTAAGCGACCGACAAGTCAAGATTTGGTTTCAAAATCGTCGCATGA
AGAAGAAAAGGATGTTGAACCGCGGGGAACTTGGCGGCGAAGATGAGGACGAAGACAAGT
TAGCGAACGACGAAGAGACCGACGAACGCCGAGAACTGACTTTTATTAGTCCCTGACGTT
TTAACTACTTCCTGACATGACGGGTTGTCAAGCCCTATTGTGTGGGAACAAGCATGCTGG
ACACGTTGATGAGATGGAAAACGTGTATTGTGTGAAAACCTCGCGTTTTGCACAGTTTTT
TTTACAAGTGCTACTGGTCGGCGACTAAAGGCTCTTTGCATGTGCGACTGTACACGCCTA
AAACACCTAACATTTAACAGTACAGACAAAGTAGGCCCATTCAAAGCGTTATCCTAAATC
AGTCTGTCGCTCAAGCATTCCCATATGGCAAGACACATGCTGTATGTTAATCTGAACAGT
AGAGGTATTGATTTTGAAAAAGTTCTCTTTGTATTATGTAAAAAAAGTCGTTAAGGCTCG
TTAAAAGACTGAACATTTGGTCCAGGTTATTTACCCATACACTACAACAAAGATTGGGAT
ATTATTTAGAAAAATTGGTAATTAAAATACAAGTGAATATTTTTAACAAAGCATAACGGT
TTAAAATACTTCTGTCATTAAAAATATTTTTGTCAGGACACCACAATATGTCGAAACGCT
AAAACCAGGTTTCCTTCTAATTTATTGCCCTCTCTGTTCTTTATCCGACTTTTATAAAGC
CACAATTGTACGCCAAAGGCTGGAAATACAGTTATGCTTGAAGTCTAAAGCTAAAAAGTG
CATCAAACAGCCTTGGAGCAGTCGCCATTTTACTTTTATTTGTATTTCTGACACCGTTTA
GGACTAGTTTTATATTCCTATCTGTCAACACAGCTTTTGTTCCGTTACAGCGTCGTTTTT
TTCTTATTTTTTGCTGTTTTTTATCCAATTATTGCATACTGGCATTTCACGGTTGAATCA
AACCATCGTTAAGTTAATAACAGATGATCGTCCATTTATATATTTATAGTCTTTTCAACG
CTGTTACATATATTGCATAATAGTTCGAGTTTTCATTGGAG

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[389-464] 8.13E-24
ProSiteProfiles
Homeobox_dom (IPR001356) - T[404-464] 20.633
SMART
Homeobox_dom (IPR001356) - T[406-468] 6.6E-24
Pfam
Homeobox_dom (IPR001356) - T[407-463] 4.8E-20
CDD
Homeobox_dom (IPR001356) - T[413-464] 9.48263E-22
ProSitePatterns
Homeobox_CS (IPR017970) - T[439-462] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HXC12_HUMAN 56.098 % 95.5 5.66E-22
HXD12_HUMAN 62.5 % 97.1 1.15E-22
HXD11_HUMAN 60.938 % 87.4 8.0E-19