- Molecular Tool 'p10.27::NICD' >
- Transcript 'KH2012:KH.C9.335.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S32.g01263.01.t
Possible name(s)
COL12A1; SELE; SELP
Gene model
Location
S32 [226,200 / 241,406]
Amino acid sequence
Length: 1,005
>Phmamm.CG.MTP2014.S32.g01263.01.p
MSPYLKEDSVSNKKRTPLTPPKWRPLQPAIRDVTVFLLTPDTVLITFTDIKNHSASFFNV
QVLPRKSSLIAPVIVRNNTIQGINLDKDLPQGTLAYLARGLSAGNKYSISVRARFQQSFY
NKKIFHSFYTKPRPPSSIKVVSFDTKAVTLFVAMSRPGNGDRVDNYELSYRRADDPLSRE
IRLPSFNRPGLRMISELTPATEYIFSAWTSVGNTDKPRAVSARINITVTTGSHSDRYLLY
PAVPGIVEIVPSELHATTITWTFRVPLHVTAKTQERFIVTLRDDTNGPVIIDTTLHHKAR
SYTAENLLPKTTYTLSLKANTAGKDSITAYAEPTTTLMRCYSCYDAKSRDECDQWVECSP
EASGCLNEIRKHGITNTIEFHPAMYRATLVCKQPNACKDNEKQNLTTQCNPDRNRNVDPP
DVCRCCCEGDLCNGPGSICGDVLGWLDPFRSPEIVTMPTAVYCPEHGELLNGHVACSQGR
EIGSNCSFTCDEGFYVSGDDDVTCQEGGQWTAEMPECIQIRSCEPIDDEGMILKCTKEFN
GGSYCKLSCVPGYLNTGVSNLRCSISGKWSQPKPACLQIDDCQPDPCMNGGHCHDLINDF
ECECMPGWLGKICDEEVFCEMLEAPENGLLQCTDNNRYGSRCRYACSEGYEQHGPQYTRC
MPDGYWSSYEPTRCVVKNCPVPPLRLVNGGTANCTGYKIGDTCDFHCPSGLAVAGGPDRI
VCQRDQTWTDKVPCCDLPCPPHALVDLLFLLDSSSSVGRKNWRRLIDFTLTLLDSFVIGP
DDMRVGVARYNRRFDKRNEILVGDYTGVNELRQKLKKIPYNGGGTLTGKALWHLHNDSLN
APGNRPNVPDVIVVITDGMATDNVKNAARAIKGRGAKIYVVGVVNKFKRMNMDQLRDISS
GEDYLRIIDEGYKQLARDLTGRLTKDVCWLPCNVKYEQRELYNRQRMLQAQEEDADFWAQ
LDRSGTQPQVQGQPIPTRESPGGAGENRNFVETNSQTGPVRKSAT
Nucleotide sequence
Length: 3,018
>Phmamm.CG.MTP2014.S32.g01263.01.t
ATGAGCCCTTACCTAAAGGAAGACAGCGTTTCCAACAAAAAACGAACTCCGTTGACCCCT
CCCAAGTGGCGGCCTTTGCAACCAGCCATCCGAGATGTCACCGTCTTTCTGCTTACACCA
GACACCGTACTTATTACTTTCACAGACATAAAGAATCATTCGGCTTCATTCTTCAACGTT
CAAGTTCTTCCTCGAAAATCGTCTCTAATCGCTCCAGTGATAGTGAGAAACAACACGATA
CAAGGAATCAACTTAGACAAAGATCTTCCCCAGGGAACTCTCGCATATCTAGCAAGGGGA
CTATCTGCTGGGAACAAATACAGTATCAGTGTTCGCGCGAGGTTCCAACAATCATTTTAC
AACAAGAAAATCTTTCATTCCTTCTACACAAAGCCTCGTCCTCCTAGTTCGATCAAGGTT
GTATCTTTCGACACGAAAGCAGTCACCCTGTTTGTTGCCATGTCAAGACCTGGAAACGGT
GACCGTGTGGACAACTACGAACTCAGCTACAGACGAGCCGACGACCCTCTATCCCGAGAA
ATTCGTCTTCCTTCGTTTAACCGACCTGGCCTTCGCATGATCTCTGAACTTACACCAGCC
ACTGAATATATTTTCAGCGCTTGGACTTCAGTGGGCAACACAGACAAACCTCGAGCTGTG
TCAGCCAGAATCAACATCACTGTAACAACAGGTAGCCATAGCGACCGATATTTGTTATAT
CCAGCGGTCCCTGGAATCGTTGAAATTGTCCCTTCGGAACTTCACGCAACAACGATCACT
TGGACCTTTCGCGTTCCACTTCACGTCACAGCCAAGACACAGGAAAGATTCATTGTGACG
TTGCGTGACGACACAAACGGACCCGTCATCATAGACACGACTCTTCACCACAAGGCTCGA
TCGTACACAGCCGAAAATCTGCTGCCGAAAACTACATACACCTTAAGTTTGAAAGCGAAC
ACAGCAGGAAAGGATTCAATCACAGCATACGCTGAACCAACCACAACATTGATGCGGTGC
TACAGTTGTTATGACGCCAAGTCACGTGACGAATGTGACCAATGGGTGGAGTGCTCACCG
GAGGCCAGTGGTTGTCTGAACGAGATTCGAAAACATGGAATCACAAACACCATAGAATTT
CATCCAGCGATGTACAGAGCAACCTTAGTTTGCAAACAACCAAATGCTTGCAAGGATAAC
GAAAAACAAAACTTGACCACTCAATGCAACCCAGACCGAAATCGTAACGTTGATCCACCA
GATGTTTGCAGATGCTGCTGCGAAGGAGATTTATGCAACGGACCCGGAAGTATTTGTGGT
GACGTACTTGGCTGGCTTGATCCATTCAGATCACCGGAAATCGTTACTATGCCAACTGCA
GTTTACTGTCCTGAGCATGGCGAACTTCTCAACGGGCACGTGGCTTGCTCGCAAGGCCGG
GAAATCGGATCCAACTGTTCTTTTACTTGTGACGAGGGTTTCTACGTGTCAGGTGATGAC
GACGTCACGTGTCAAGAGGGCGGGCAGTGGACTGCAGAAATGCCGGAATGCATCCAAATC
AGGTCATGTGAACCAATCGACGATGAAGGAATGATTTTGAAATGCACCAAAGAGTTTAAT
GGCGGTTCCTACTGCAAACTATCCTGTGTACCGGGTTATCTAAATACAGGAGTGTCCAAT
CTACGATGTTCTATATCAGGAAAGTGGAGTCAACCCAAGCCCGCCTGTCTACAAATCGAT
GATTGCCAGCCTGACCCCTGCATGAACGGCGGCCATTGCCACGATCTCATAAACGACTTT
GAATGTGAGTGCATGCCTGGATGGCTGGGGAAGATTTGCGACGAAGAAGTCTTTTGTGAG
ATGTTGGAAGCCCCTGAAAACGGTTTGCTGCAGTGCACAGACAACAACCGTTACGGATCC
CGGTGTAGATACGCTTGCTCTGAAGGTTACGAACAGCACGGACCTCAGTACACAAGATGC
ATGCCAGATGGCTACTGGTCTTCATACGAGCCCACTCGCTGTGTAGTTAAAAATTGTCCC
GTTCCACCCCTTCGACTAGTCAACGGAGGAACTGCGAACTGCACAGGATACAAAATCGGT
GATACTTGTGATTTCCATTGCCCCTCTGGTCTTGCAGTCGCTGGTGGTCCGGATCGCATC
GTTTGTCAACGAGATCAAACCTGGACAGACAAGGTGCCCTGTTGCGACCTCCCGTGTCCA
CCTCATGCTCTCGTGGATCTTTTGTTCCTCCTCGACTCATCCTCATCAGTGGGAAGAAAA
AACTGGAGAAGGCTCATCGACTTTACTCTCACACTGCTTGACTCGTTCGTGATTGGACCA
GACGATATGCGAGTGGGCGTCGCAAGATATAACAGGCGATTCGACAAGAGGAACGAGATT
CTGGTTGGAGACTACACAGGTGTTAACGAGCTGCGTCAAAAGTTGAAGAAAATTCCGTAC
AATGGCGGAGGGACACTGACTGGTAAAGCACTATGGCATCTTCACAACGACAGTCTCAAT
GCCCCTGGCAACCGTCCAAACGTCCCGGATGTAATTGTCGTCATTACTGACGGCATGGCA
ACGGACAACGTCAAAAATGCCGCAAGAGCCATCAAGGGACGGGGCGCAAAGATATATGTT
GTGGGTGTGGTGAACAAGTTCAAGCGAATGAACATGGACCAGTTGCGAGACATTTCATCG
GGCGAGGATTATCTTAGGATCATTGATGAAGGTTACAAGCAATTGGCTCGCGATCTCACT
GGTCGACTGACAAAGGACGTTTGCTGGTTGCCATGCAACGTAAAATACGAACAAAGGGAG
TTGTACAATCGCCAACGAATGTTGCAGGCGCAAGAAGAAGATGCTGACTTCTGGGCTCAA
CTAGATCGCAGTGGGACCCAGCCACAGGTGCAGGGGCAACCAATACCCACACGGGAAAGT
CCAGGGGGCGCAGGAGAAAACCGCAATTTCGTGGAGACAAATTCGCAAACAGGACCGGTT
CGAAAATCGGCCACCTAA
| SMART |
FN3_dom (IPR003961) - T[27-118] 8.6 - T[132-214] 14.0 - T[241-326] 0.23 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[29-133] 7.022 - T[134-232] 9.081 - T[243-339] 9.957 |
| Gene3D |
Ig-like_fold (IPR013783) - T[116-230] 6.0E-5 - T[243-341] 9.5E-6 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[131-327] 3.16E-13 |
| CDD |
FN3_dom (IPR003961) - T[132-223] 1.66128E-5 - T[241-336] 2.42807E-6 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[461-519] 10.871 - T[521-578] 9.732 - T[617-676] 9.836 - T[677-737] 9.618 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[461-523] 4.17E-13 - T[524-579] 4.86E-8 - T[617-684] 2.29E-13 - T[679-742] 3.24E-8 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[463-517] 1.3E-10 - T[533-576] 1.2E-5 - T[619-674] 1.2E-7 - T[679-735] 5.0E-6 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[463-517] 8.8E-13 - T[523-576] 1.0E-4 - T[619-674] 1.4E-9 - T[679-735] 2.3E-7 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[463-518] 2.3527E-13 - T[524-576] 2.40748E-7 - T[619-672] 7.02234E-11 - T[679-735] 2.53156E-5 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[578-614] 2.4E-9 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[578-602] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[578-614] 20.772 |
| SMART |
EGF-like_dom (IPR000742) - T[581-614] 5.2E-6 |
| Pfam |
EGF-like_dom (IPR000742) - T[582-610] 2.0E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[593-604] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[602-613] . - T[602-613] . |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[739-929] 6.38E-43 |
| SMART |
VWF_A (IPR002035) - T[744-920] 2.4E-27 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[744-936] 2.7E-39 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[746-923] 24.676 |
| Pfam |
VWF_A (IPR002035) - T[746-903] 2.3E-29 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 29.36 % | 114 | 1.09E-25 |
| LYAM2_HUMAN | 27.74 % | 107 | 9.44E-24 |
| COCA1_HUMAN | 33.508 % | 111 | 1.21E-24 |